Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00596 ATGACTCTTATGAAAACCATGTTCTTGTTCCTCATTGTTCTCTACTTAACCTCTACTCAAGCAGCTCGTTTCGACGTCATAAACCGATGCGGCTATACTATATGGCCTGCGGCCTTGCCCGGTGGTGGGAGGCAGTTGAACCCGGGCGAGACCTGGCCCCTCGACGTCGCTGCAGGCACCCAAAGTGGCCGCATCTGGGCCCGAACCGGCTGCAGCTTCGATGGTTCAGGCCGCGGTGGATGCCAGACCGGTGACTGTGGCGGTTCCCTGAATTGTCAACTAAGCGGTAAAGCTCCTACCACCCTGGCCGAATTCACACTGAACGGAGGGTCCAATTTGGACTATTTTGATATCTCTGTGATAGACGGGTTCAACGTTCCCATGGAATTTAGTCCAACATCTAGCAATGGGTGCAACAGAAGTGGATTAAGGTGCAACGATGCACAGTGCCCCGATGCTTATCATAACCCTGGGGATACTAAGACGTTCACATGCCCAGGTGGAAGGAACTATAGGGTTGTCTTTTGCCCTTGA 534 0.5281 MTLMKTMFLFLIVLYLTSTQAARFDVINRCGYTIWPAALPGGGRQLNPGETWPLDVAAGTQSGRIWARTGCSFDGSGRGGCQTGDCGGSLNCQLSGKAPTTLAEFTLNGGSNLDYFDISVIDGFNVPMEFSPTSSNGCNRSGLRCNDAQCPDAYHNPGDTKTFTCPGGRNYRVVFCP* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00596 177 PIRSF PR5 144 177 IPR001938 -
Rops2g00596 177 PIRSF PR5 1 149 IPR001938 -
Rops2g00596 177 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
Rops2g00596 177 ProSiteProfiles Thaumatin family profile. 21 177 IPR001938 -
Rops2g00596 177 SMART tha2 24 177 IPR001938 -
Rops2g00596 177 CDD TLP-P 24 177 - -
Rops2g00596 177 Pfam Thaumatin family 28 140 IPR001938 -
Rops2g00596 177 Gene3D Thaumatin 147 177 IPR037176 -
Rops2g00596 177 Gene3D Thaumatin 21 146 IPR037176 -
Rops2g00596 177 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Rops2g00596 177 PRINTS Pathogenesis-related protein signature 42 51 IPR001938 -
Rops2g00596 177 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Rops2g00596 177 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
Rops2g00596 177 PRINTS Pathogenesis-related protein signature 167 176 IPR001938 -
Rops2g00596 177 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Rops2g00596 177 PANTHER OS03G0233200 PROTEIN 147 177 IPR001938 -
Rops2g00596 177 SUPERFAMILY Osmotin, thaumatin-like protein 22 177 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00596 Rops-Chr2 8530228 8530761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00596 4 151 Receptor kinase-like Gene Family AT5G38280 35.185 1.89e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00596 - - psat:127102054 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00596 2 8530228 8530761 Rops2g00596 2 8530228 8530761 ECH
Rops1g02165 1 43201138 43202243 Rops2g00596 2 8530228 8530761 PCT