Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02165 ATGCAACCTCGTCCTATGCTCCTTGCTCATGCTGGGTGCCTCTTTGCAACCAAAGCAGCAAATTTCGAGATCGTCAACAATTGTCCCTACACAGTGTGGGCAGCCGCCAGCCCCGGCGGTGGTCACCGCCTTAACCGTGGTCAGACATGGAACCTGTGGGTGGCACCTGGCACCGCCATGGCTCGTATCTGGGGTCGCACTGGCTGCAACTTCGACAGCAGCGGTCGCGGTCGTTGTCAAACCGGAGACTGCACGGGTGGACTTCAATGCACAGGTTGGGGTGTCCCTCCAAACACATTGGCTGAATTTTCACTTAACCAATTTGCCAATAAAGATTTATATGACATCTCCGTTATTGAGGGTTTCAACATTCCCATGGATTTCTACCCTCTCAACGGTGGCTGTCACAAAATCAGTTGCACTGCTGACATTAACGGACAGTGCCCTAACGAATTGAGGGCTCCAGGTGGTTGTAACAACCCATGCACAGTGTTCAAGACCAATGAATATTGCTGCACCAATGGCCGAGGAAGCTGTGGAGCCACTGGGTTCTCAAGGTTCTTCAAAGACAGATGCAGAGATGCTTACAGTTACCCTCAGGATGATCCAACCAGCACTTTCACTTGCCCTGCTGGTTCTAACTACAGAGTTGTTTTCTGTCCATTGGGATATCCTCATATTCCCCTCCAGATGCCTGGAAGTGAGGTCAATGAGTATTGA 720 0.5097 MQPRPMLLAHAGCLFATKAANFEIVNNCPYTVWAAASPGGGHRLNRGQTWNLWVAPGTAMARIWGRTGCNFDSSGRGRCQTGDCTGGLQCTGWGVPPNTLAEFSLNQFANKDLYDISVIEGFNIPMDFYPLNGGCHKISCTADINGQCPNELRAPGGCNNPCTVFKTNEYCCTNGRGSCGATGFSRFFKDRCRDAYSYPQDDPTSTFTCPAGSNYRVVFCPLGYPHIPLQMPGSEVNEY* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02165 239 ProSitePatterns Thaumatin family signature. 75 90 IPR017949 -
Rops1g02165 239 SUPERFAMILY Osmotin, thaumatin-like protein 20 221 IPR037176 -
Rops1g02165 239 Gene3D Thaumatin 19 222 IPR037176 -
Rops1g02165 239 SMART tha2 22 221 IPR001938 -
Rops1g02165 239 PANTHER OS03G0233200 PROTEIN 13 221 IPR001938 -
Rops1g02165 239 Pfam Thaumatin family 26 221 IPR001938 -
Rops1g02165 239 ProSiteProfiles Thaumatin family profile. 19 221 IPR001938 -
Rops1g02165 239 PRINTS Pathogenesis-related protein signature 21 33 IPR001938 -
Rops1g02165 239 PRINTS Pathogenesis-related protein signature 211 220 IPR001938 -
Rops1g02165 239 PRINTS Pathogenesis-related protein signature 40 49 IPR001938 -
Rops1g02165 239 PRINTS Pathogenesis-related protein signature 62 73 IPR001938 -
Rops1g02165 239 PRINTS Pathogenesis-related protein signature 75 104 IPR001938 -
Rops1g02165 239 PRINTS Pathogenesis-related protein signature 112 128 IPR001938 -
Rops1g02165 239 CDD TLP-P 22 221 - -
Rops1g02165 239 PIRSF PR5 4 235 IPR001938 -
Rops1g02165 239 FunFam Thaumatin I 20 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02165 Rops-Chr1 43201138 43202243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02165 7 221 Receptor kinase-like Gene Family AT5G38280 35.000 1.39e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02165 - - gmx:100240704 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02165 1 43201138 43202243 Rops2g00596 2 8530228 8530761 PCT