Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00592 ATGTTCATGTTCCTCATCCTTCTCTACTTAACCTCTGCACAAGCAGCTCGTTTCGACATCATAAACCGATGCGGCTATACTGTATGGCCTGCGGCCTTGCCCGGTGGTGGGAGGCAGTTGAACCGTGGCGAGACGTGGCCCCTCGACGTCCCATCAGGCACCCAAAGTGCCCGCATTTGGGCCCGAACCGGCTGTAGCTTCGACGGTTCAGGCCGTGGTGGATGCCAGACCGGTGACTGTGGCGGTTCCCTGAATTGTCAACTAAGCGGTAAACCTCCTACCACCCTGGCTGAATTCTCGCTGAGCGGAAGGGTCAATTTCGACTCTTTTGATATCTCTGTGATAGATGGGTTCAACGTTCCCATGGAATTCAGCCCAACATCTAACAAAGGGTGCAACACAAATGGATTAAGGTGCAACAATGCCCAGTGCCCCGATGCTTATCATAACCCTGGGGATACTAGGACGTTTACATGCCCAGGTGGAACCAATTATAGGGTTGTCTTTTGCCCTTGA 516 0.5291 MFMFLILLYLTSAQAARFDIINRCGYTVWPAALPGGGRQLNRGETWPLDVPSGTQSARIWARTGCSFDGSGRGGCQTGDCGGSLNCQLSGKPPTTLAEFSLSGRVNFDSFDISVIDGFNVPMEFSPTSNKGCNTNGLRCNNAQCPDAYHNPGDTRTFTCPGGTNYRVVFCP* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00592 171 ProSitePatterns Thaumatin family signature. 71 86 IPR017949 -
Rops2g00592 171 PANTHER OS03G0233200 PROTEIN 139 171 IPR001938 -
Rops2g00592 171 SUPERFAMILY Osmotin, thaumatin-like protein 16 171 IPR037176 -
Rops2g00592 171 SMART tha2 18 171 IPR001938 -
Rops2g00592 171 CDD TLP-P 18 171 - -
Rops2g00592 171 ProSiteProfiles Thaumatin family profile. 15 171 IPR001938 -
Rops2g00592 171 PIRSF PR5 138 171 IPR001938 -
Rops2g00592 171 PIRSF PR5 1 142 IPR001938 -
Rops2g00592 171 Gene3D Thaumatin 15 138 IPR037176 -
Rops2g00592 171 Gene3D Thaumatin 139 171 IPR037176 -
Rops2g00592 171 PRINTS Pathogenesis-related protein signature 108 124 IPR001938 -
Rops2g00592 171 PRINTS Pathogenesis-related protein signature 17 29 IPR001938 -
Rops2g00592 171 PRINTS Pathogenesis-related protein signature 58 69 IPR001938 -
Rops2g00592 171 PRINTS Pathogenesis-related protein signature 36 45 IPR001938 -
Rops2g00592 171 PRINTS Pathogenesis-related protein signature 161 170 IPR001938 -
Rops2g00592 171 PRINTS Pathogenesis-related protein signature 71 100 IPR001938 -
Rops2g00592 171 Pfam Thaumatin family 22 135 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00592 Rops-Chr2 8483931 8484446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00592 1 145 Receptor kinase-like Gene Family AT5G38280 37.107 2.63e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00592 - - pcin:129312607 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00592 2 8483931 8484446 Rops2g00592 2 8483931 8484446 ECH
Rops1g02168 1 43227027 43227755 Rops2g00592 2 8483931 8484446 PCT