Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02168 ATGGGTTACTTATGCAACCTCACGCTATGTTCCCTGCTCATGCTTAGTGCCTCTTTGGTCACAACAAAAGCAGCAAATTTCGAGATACTCAACAATTGTCCTTACACAGTGTGGGCAGCTGCCAGCCCAGGCGGTGGTCGCCGCCTTGACCGTGGTCAGACATGGAACCTGTGGGTGAACCCTGGCACCACCATGGCTCGTATCTGGGGTCGCACCAACTGCAACTTCGACGGCAGCGGTCACGGTCGTTGTCAAACCGGAGACTGCACCGGTGGACTTCAATGCACAGGTTGGGGTGTCCCTCCAAACACATTGGCTGAATTTGCACTTAACCAATTTGCCAATCAAGATTTCTATGACATCTCCCTTGTTGATGGTTTCAACATTCCCATGGATTTCTACCCTGTAAACAGTGCTTGCCATAAAATCAGCTGCACTGCTGATATTAATGGGCAGTGTCCTAATGAATTGAAGGCTCCAGGTGGTTGTAACAACCCTTGCACAGTGTTTAAGACCAATGAATATTGCTGCACCAATGGCCAAGGAAGTTGTAACGCCACTAAATACTCGAAATTCTTCAAAGAAAGATGCAAAGACGCTTACAGTTACCCTCAGGATGATCCATCTAGCACTTTCACTTGCCCTGCTGGTTCTAACTACAAAGTTGTGTTCTGTCCAAGGGGCAATCCTCATATCCAGATGCCTGGAAGTGCCAGCGATGAGTATTGA 729 0.4829 MGYLCNLTLCSLLMLSASLVTTKAANFEILNNCPYTVWAAASPGGGRRLDRGQTWNLWVNPGTTMARIWGRTNCNFDGSGHGRCQTGDCTGGLQCTGWGVPPNTLAEFALNQFANQDFYDISLVDGFNIPMDFYPVNSACHKISCTADINGQCPNELKAPGGCNNPCTVFKTNEYCCTNGQGSCNATKYSKFFKERCKDAYSYPQDDPSSTFTCPAGSNYKVVFCPRGNPHIQMPGSASDEY* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02168 242 PIRSF PR5 2 240 IPR001938 -
Rops1g02168 242 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Rops1g02168 242 CDD TLP-P 27 226 - -
Rops1g02168 242 FunFam Thaumatin I 25 226 - -
Rops1g02168 242 ProSiteProfiles Thaumatin family profile. 24 228 IPR001938 -
Rops1g02168 242 SUPERFAMILY Osmotin, thaumatin-like protein 26 227 IPR037176 -
Rops1g02168 242 Gene3D Thaumatin 24 228 IPR037176 -
Rops1g02168 242 PRINTS Pathogenesis-related protein signature 216 225 IPR001938 -
Rops1g02168 242 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Rops1g02168 242 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Rops1g02168 242 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Rops1g02168 242 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Rops1g02168 242 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Rops1g02168 242 PANTHER OS03G0233200 PROTEIN 13 226 IPR001938 -
Rops1g02168 242 SMART tha2 27 226 IPR001938 -
Rops1g02168 242 Pfam Thaumatin family 31 226 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02168 Rops-Chr1 43227027 43227755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02168 6 240 Receptor kinase-like Gene Family AT5G38280 34.615 8.94e-41 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02168 - - gmx:100240704 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02168 1 43227027 43227755 Rops2g00592 2 8483931 8484446 PCT