Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00479 ATGGATGATGAATTGGTTGATGAGGCAACCAGATTGGAGGTTGCTGAGGGTGTGCAACACCAAAGCAAGGATGATGAGTATTCACTGAACCCTGAATGCCACAAAATAATAAAACCTCAAGAAATGCGTAATGACTACTCTCAGATCTCGCCTCGAGAATATGATGACATTCCACAAGGTAAAAATGTAGTTGAAGCCGCCATTGGCCATGTTGCAGGGTCAGAACATCTGCATCCGGGTCTGTTTTTTGATGATGGTGCTCGTAACATGGTTGAAGAATTAACGGTGAAGAGTTACAATGGTTCGAGCTTAGATATTGGTACATCGAGCAACCGCGAGCTTATGTATAATAGCCAGGGTCAATGGCAGCATTTTTATCAGCTAGGTAGTGGTAATTCAGGAATGGGAAATTCACTAAGTGATACTGGGTACAGAAATAGTGTGCAAGCTACATCTAGTGTTGGTGGGGAGGACATTGGGTCCATGCCTTTCCCACAGAGATTAGCTAGAAGAAAATCACTCAGTGATGATCAGAGCAATGTCATGAAACACTTGACAACTGCTGAACATGAAGAGGATGCAGGTGATGCTCGTGAAGGAATACGAACAAAAATTATATCCAGATCAGGATTTTCCGAGTATTTTATTAAGAATACATTGAAGGGAAAGGGTATTGTATGTAAAGGTCCATCTTCTAATGGCTTATGTGTTGAGTCTAGAGATCAGAGTCTGATAAAGGCTGGCGTTAGCACTCGGATGGATTCCAATCTACCACTGAGCTCTGGTTCTGAAACTGCAAAGTCTCCTCACAATGTAACAGTGCCAAGATCAGGTGCGTCTGACTGTAATGGTGTGACTCTGAGAGAATGGTTGAAAGCTGGGCACCACAATGGGAGCAAAACAGAGCACTTGAATATATTTAGAAAGATTGTGGCTTTGGTGGATAGTTCTCACTCTCAGGGAGTTGCACTGCACAATCTGTGCCCATCTTATATTAAATTGTTGCCATCAAACCATGTTGTGTACCTTGGGTTGCCTACTCAGAAACAGACGTTTGATAGTGTTGCAAATTCTGAAGTCCTTCAGTTGGAAAATTCTTTAATTAGAAAAAGGCCGTCAGAGCAGGTAATGTCACCCTCTCTTGATATTTGGTCGAAGAAACAGAAATCTCATGAGAATGTCAGAGTTGCTGGTGATTGGAGTCAGTACCCTCCAAGGTCCGACTTGTATCTTCAAATTGCTAATGATATTAAAGTCAATGCTGTGGGATCTCAAGATTATTGCAATGAATATAAGGAAGATATCCAGTTTTCTAGACATAATATTTGGAGAATGTCTAGCATCCCTCACATATCTAATGCCAGTCCATTGCAATTGTCTTCTTTGAATGAAAGACTGGAAGATAAGTGGTATACAAGTCCCGAGGGAGGTTGCACAACATCATCAAATATCTACTGTCTGGGAGTCCTCTTTTTTGAGTTACTTAGCCATTTTGACTCAGAAAGAGCACATATTGCAGCAATGTCTGATCTTCATCATAGGATTCTTCCTCCAGGTTTCCTATCAGAAAATCCTAAGGAAGCTGGATTTTGTCTTTGGCTACTGCATCCTAAACCATCATCACGTCCAACAACAAGAGAGATCCTACAATCTGAAGTGATTAATGGAATACTGGAGATGTACAGTGAGGAATTATCATCAAGTCTCGACCAAGATGATGCAGAATCAGAATTATTGTTGCATTTCCTCATCTCACTAGAAGGGCAGAAGCACAAGGATGCCTACAAATTGGTAGAAGAAATCAGATGTTTGGAATCAGATATAGAAGAGGTGAAGAGAAGACACGACTTAAGAAAATCTTTGGTTCCCTCTAACTTGCAGAATGGATCCTCTTGCCAAATAGAGAGTGCGTCTCTTAAAGAAGAACCTTCAAGGTCAGAAACATCACTGCCAGCATCCACAATCTCTAATGCAAATGAACCGAGATTGATGAAAAATATATGCCAGCTTGAAAGTGCTTACATTTCCATGAGATCCACAATCAAGCTTCCTGAAACAGATGCTGCAACTCACCCAGATAAAGATATACTTAAAAATCGTGAGAACTGGTGTATGGCCCAAAAAGACACAGAACAACATACAAGAACAGATACTTTAGGGGCTTTCTTTGACGGTTTGTGCAAGTATGCACGTTACAGCAAGTTTGAAGTACGGGGTGTACTAAGAAATGCAGATTTTAACAATGCTGCAAATGTAATCTGCTCTCTGAGTTTTGATAGAGATGAAGACTACTTTGCTGCTGCTGGGATATCAAAGAAAATAAAAATTTTTGAGTTTAATGCACTTCTCAGTGACTCTGTTGATATCCATTATCCTGTAGTTGAGATGTCAAACAGATCAAAGCTCAGTTGTGTTTGCTGGAATAACTACATCAAGAACTACCTTGCCTCCACGGACTATGATGGTGCAGTTAAGCTATGGGATGCTAGTACAGGTCAAGGGTTTTCTCAATTCACCGAGCATGAAAAGAGGGCTTGGTCTGTTGATTTCTCTCTGGTATGCCCCACAAAATTTGCCAGTGGGAGTGATGATTGTTCTGTGAAGCTGTGGAGTATCAGTGAGAGAAACAGTTTAGGCACAATCAGGAATGTTGCTAATGTCTGTTGTGTTCATTTCTCCGCGCATTCCTCTCATCTGCTGGCCTTTGGATCTGCGGATTACTCAACTTATTGCTATGATCTTCGCAATCTTAGAAGCCCCTGGTGTGTGTTGGCTGGCCATCGTAAAACTGTAAGCAATGTCAGATTCTTAGACTCTGAAACACTTGTTTCTGCATCAACCGATAATACATTAAAGATCTGGGATCTCAATAAAGCCTCACCTACGGGTCCATCAACTAGTGCTTGCAGCTTAACCCTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAGCTGCTGATGGATATATTGCATGTGGTTCAGAAACAAATGAGGTTTATTCCTACTACAGATCTCTTCCTATGCCAGTCACTTCACACAAGTTTGGGTCCATTGATCCCATTTCTGGTAAAGAGACTGATGATGACAATGGTCATTTTGTTTCCAGTGTATGCTGGAGAGGGAAATCAGACATGGTTATTGCGGCCAATTCAAGTGGAGGCATAATTGGATGGAGAAACAGATTGACATTGTAA 3201 0.4121 MDDELVDEATRLEVAEGVQHQSKDDEYSLNPECHKIIKPQEMRNDYSQISPREYDDIPQGKNVVEAAIGHVAGSEHLHPGLFFDDGARNMVEELTVKSYNGSSLDIGTSSNRELMYNSQGQWQHFYQLGSGNSGMGNSLSDTGYRNSVQATSSVGGEDIGSMPFPQRLARRKSLSDDQSNVMKHLTTAEHEEDAGDAREGIRTKIISRSGFSEYFIKNTLKGKGIVCKGPSSNGLCVESRDQSLIKAGVSTRMDSNLPLSSGSETAKSPHNVTVPRSGASDCNGVTLREWLKAGHHNGSKTEHLNIFRKIVALVDSSHSQGVALHNLCPSYIKLLPSNHVVYLGLPTQKQTFDSVANSEVLQLENSLIRKRPSEQVMSPSLDIWSKKQKSHENVRVAGDWSQYPPRSDLYLQIANDIKVNAVGSQDYCNEYKEDIQFSRHNIWRMSSIPHISNASPLQLSSLNERLEDKWYTSPEGGCTTSSNIYCLGVLFFELLSHFDSERAHIAAMSDLHHRILPPGFLSENPKEAGFCLWLLHPKPSSRPTTREILQSEVINGILEMYSEELSSSLDQDDAESELLLHFLISLEGQKHKDAYKLVEEIRCLESDIEEVKRRHDLRKSLVPSNLQNGSSCQIESASLKEEPSRSETSLPASTISNANEPRLMKNICQLESAYISMRSTIKLPETDAATHPDKDILKNRENWCMAQKDTEQHTRTDTLGAFFDGLCKYARYSKFEVRGVLRNADFNNAANVICSLSFDRDEDYFAAAGISKKIKIFEFNALLSDSVDIHYPVVEMSNRSKLSCVCWNNYIKNYLASTDYDGAVKLWDASTGQGFSQFTEHEKRAWSVDFSLVCPTKFASGSDDCSVKLWSISERNSLGTIRNVANVCCVHFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKTVSNVRFLDSETLVSASTDNTLKIWDLNKASPTGPSTSACSLTLSGHTNEKNFVGLSAADGYIACGSETNEVYSYYRSLPMPVTSHKFGSIDPISGKETDDDNGHFVSSVCWRGKSDMVIAANSSGGIIGWRNRLTL* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00479 1066 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 721 1059 - -
Rops2g00479 1066 Pfam WD domain, G-beta repeat 923 955 IPR001680 GO:0005515
Rops2g00479 1066 Pfam WD domain, G-beta repeat 837 871 IPR001680 GO:0005515
Rops2g00479 1066 MobiDBLite consensus disorder prediction 1 27 - -
Rops2g00479 1066 Gene3D - 722 1059 IPR015943 GO:0005515
Rops2g00479 1066 ProSitePatterns Trp-Asp (WD) repeats signature. 942 956 IPR019775 -
Rops2g00479 1066 ProSiteProfiles Trp-Asp (WD) repeats profile. 795 837 IPR001680 GO:0005515
Rops2g00479 1066 SMART WD40_4 1022 1061 IPR001680 GO:0005515
Rops2g00479 1066 SMART WD40_4 874 913 IPR001680 GO:0005515
Rops2g00479 1066 SMART WD40_4 831 871 IPR001680 GO:0005515
Rops2g00479 1066 SMART WD40_4 966 1005 IPR001680 GO:0005515
Rops2g00479 1066 SMART WD40_4 789 828 IPR001680 GO:0005515
Rops2g00479 1066 SMART WD40_4 734 778 IPR001680 GO:0005515
Rops2g00479 1066 SMART WD40_4 917 955 IPR001680 GO:0005515
Rops2g00479 1066 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 924 957 - -
Rops2g00479 1066 ProSiteProfiles Trp-Asp (WD) repeats profile. 838 880 IPR001680 GO:0005515
Rops2g00479 1066 MobiDBLite consensus disorder prediction 255 278 - -
Rops2g00479 1066 SUPERFAMILY WD40 repeat-like 750 1061 IPR036322 GO:0005515
Rops2g00479 1066 PRINTS G protein beta WD-40 repeat signature 942 956 IPR020472 -
Rops2g00479 1066 PRINTS G protein beta WD-40 repeat signature 858 872 IPR020472 -
Rops2g00479 1066 PRINTS G protein beta WD-40 repeat signature 815 829 IPR020472 -
Rops2g00479 1066 SUPERFAMILY Protein kinase-like (PK-like) 464 562 IPR011009 -
Rops2g00479 1066 Coils Coil 594 614 - -
Rops2g00479 1066 ProSiteProfiles Trp-Asp (WD) repeats profile. 924 964 IPR001680 GO:0005515
Rops2g00479 1066 PANTHER PROTEIN SPA1-RELATED 2 10 1057 IPR044630 GO:0009640
Rops2g00479 1066 MobiDBLite consensus disorder prediction 8 27 - -
Rops2g00479 1066 MobiDBLite consensus disorder prediction 622 656 - -
Rops2g00479 1066 Gene3D Transferase(Phosphotransferase) domain 1 282 563 - -
Rops2g00479 1066 ProSitePatterns Trp-Asp (WD) repeats signature. 815 829 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00479 Rops-Chr2 6850922 6862805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00479 858 1001 Miscellaneous Gene Families AT5G08390 30.137 1.52e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00479 K16240 - gmx:100776980 1545.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02240 1 44339178 44347340 Rops2g00479 2 6850922 6862805 PCT