Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02240 ATGGATGAAGAATTGGTTGATGAGGCAACTCAATTAGAGGTTGCTGAGGATTCAAGGTACCAAGATGATGAGTATTCACCGAACACGGAAACCCGAAGAATCCTGAAATCCGAAGAAGTTCTTATACCTGTTAAGCAAGACTTCTCTCAGATACCACCACAGGAATATGATGACATTCTACAAGGTAAAAATGTAGTTGAAGCTACCAGCCAAGCAGCTACATCTCAACATCCTCATGCAAGCCATTTTATGGATGATACCCGAAGAGTCATGGTTGAAGAATTAACGGTAAAAAGTTACAATGGTTCAAGCTTGGATATTGGTACATCAAACAACCGAGAGCAAATGTATAATTGGAGGAAACATTGGCAGAATCTTTATCAGATTGCAAGTAATTCAGGAATCGGAAATTCACTAAGTGATATTGGGCAGAGAAACAGTGGCCAGGCTACATCTAGTGCTTGGGAGGATATTGGATCCACATCTTTCCCAGAGCGATTAGCTAGAAAATCACTCAGTGATGGTCAGAGCAATGTCATGGAACACTTGGCAGCTGCTGAAAGTAAAGAGGTTGCAGGTGATGTTCATGGAGGAACACGGACAAAAATTATATACAAATCAGGATTTGCTGAGTTTTTTATTAAAAATACATTGAAGGGTAAGGGTATTGTATGTAAAGGCCCATCTTTTGATGCCTTCAATGTTCAGTCTAGAGAGCAAAATCAGATGAAGACTGGTATTGATGCAGTTCAGAATCAGATGAAGACTGGCATGGGCACAGATCAGAAGCAGATGAAGACTGTCATTGGCAAAGATCAGAATCAGATGAAGACTAGCATTGGTGCAGATCAGAATCAGATGAAGACTGGCATTGGTACTCAGTCGAACTCTATTCTATCAGTTAACTACGGTTCCAAAACTGCAAAGTTTCCATCTTATAGTGATGCTATGCCTCGATCTGGCAGGTCTGAATGTGATGGTGTGACTTTGCGAGAATGGTTGAAATCTGAGCACCACAATGCAAGCAAAGTGGAAAGCTTAAATATATTTAGGATGATTGTGGATTTGGTGGATGACTTTCACTCTCAGGGAGTTGCATTGCATAACCTGTGTCCATCTTATATTAAATTGTTACCATCAAATCAGGTCATGTACTTTGGGTCACCAATTCGAAAACAGACAGTTGTAAATTCTGAAGTTCTTCACTCAGATAATTCTTTTGTTAGAAAAGGGACGTCAGAGCAAGTAATATTTCCCTCTCTTGATATGGGGTCAAAGAAACGAAAATTTAATGAGAATGTGAGAGTTACTGGGAGTGACTTGTGCCTTGAAACTGCTAATAGTAGTAAAGTTCATATTCCTACAATTGGGTCGCAAGATTATCAAAATGAATACGAGGAGGATATCCAATTTTCTAAATATAATATTGGGAGAATGTCTAGCATCCCTTATGTAGCTAATGAAGGTCAACTGTCATCGACTTCTTTATGTGAAAGACTGGAAAATAAGTGGTATGCAAGTCCTGAGGGAGGTTGTACAACATCATCAAATATCTACTGCCTTGGTGTCCTCCTTTTTGAGTTACTTGGCCATTTTGACTCTGAAAGGGCGCATCTTGCAGCAATGTCTGATCTTCATCATAGGATTCTTCCTCCAGTTTTCCTATCAGAAAATCCCAAGGAAGCTGGCTTTTGTCTTTGGCTGCTTCATCCTGAACCATCATCACGTCCAACAACAAGGGAAATCCTACAATCTGAAGTGATTAATGGATTGCAAGAGTTGTATAGTGAGGAATTGTCATCAAGTATTGACCAAGAAGATGCAGAATCAGAATTGTTATTGCATTTCCTCGTCTCATTAAAAGAGCATAAGCAGAAGGATGCCACCAAATTGGTAGAAGAAATCAAGTGCTTGGAATCAGATATAGAAGAGGTGGAAAGGAGGCATGACTTAGGAAAATCCTTGGTTTCCTCTGGCTTGCAAAATAATTACTCTTGTCAGAAAGAGATTATGCCTCTTAAAAAGGAACCTTTGAGTGTAGAAATGCTGCCCTCAATATCCACAATCTCTAATGCAAATGAAATGAGATTGATGAAAAATATATCCCATCTTGAAAGTGCTTACTTTTCCATGAGATCCAAAGTTCAGCTTTCTGAAACAAATACTGCAACTCACCCAGACATAGATATACTGAGAAATCGTGAGAACTGGTATGTGGCCCGAAAAGGCGAGGAACAACCTGAAAGGAATGATGCTTTAGGAACCTTCTTTGATGGTTTGTGCAAGTATGCATGTTATAGCAAGTTTGAAGTGCGGGGTGTACTAAGAAATGCAGATTTTAACAATCCTGCAAATGTAATTTGCTCTCTGAGCTTTGATCGTGATGAAGATTACTTTGCTTCTGCTGGGATATCTAAGAAAATTAAAATTTTTGAGTTCAGTGCACTTTGCAATGACTCTGTTGATATCCATTATCCTGCAGTTGAGATGTCAAACAGATCAAAGCTCAGCTGTGTTTGCTGGAATAACTATATTAAGAACTATCTTGCCTCTACAGACTATGATGGTGTAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAGTTTTCTCAATTCACTGAACATGAAAAGAGGGCTTGGTCTGTTGACTTCTCTCTAGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGAGAAACTGTTTAGGCACAATCAGGAATGTTGCTAATGTATGCTGCGTTCAATTCTCTGCTCATTCCTCTCATTTGCTGGCCTTTGGATCTGCGGATTACTCAACTTACTGTTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTGTATTGGTAGGCCACCGTAAAGCTGTAAGCTATGTCAAATTCTTAGACTCAGAAACACTTGTTTCTGCTTCTACGGATAATACATTAAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTGCATCCGCAAGTGCTTGCAGCCTAACCCTGTCAGGACATGCCAATGAGAAGAATTTTGTGGGTTTGTCAGTTGCTGATGGATATATTGCATGTGGTTCAGAAACAAACGAGGTTTGCACCTACTACAGATCGTTTCCCATGCCGATCACTTCGCATAAATTTGGGTCCATTGATCCCATCTCTGGTAAAGAGACTGATGATGACCATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGGGGGAAATCTGACATGCTTATTGCGGCCAATTCAAGGGGATGTGTAAAAGTATTACAGATGGTTTAA 3294 0.4007 MDEELVDEATQLEVAEDSRYQDDEYSPNTETRRILKSEEVLIPVKQDFSQIPPQEYDDILQGKNVVEATSQAATSQHPHASHFMDDTRRVMVEELTVKSYNGSSLDIGTSNNREQMYNWRKHWQNLYQIASNSGIGNSLSDIGQRNSGQATSSAWEDIGSTSFPERLARKSLSDGQSNVMEHLAAAESKEVAGDVHGGTRTKIIYKSGFAEFFIKNTLKGKGIVCKGPSFDAFNVQSREQNQMKTGIDAVQNQMKTGMGTDQKQMKTVIGKDQNQMKTSIGADQNQMKTGIGTQSNSILSVNYGSKTAKFPSYSDAMPRSGRSECDGVTLREWLKSEHHNASKVESLNIFRMIVDLVDDFHSQGVALHNLCPSYIKLLPSNQVMYFGSPIRKQTVVNSEVLHSDNSFVRKGTSEQVIFPSLDMGSKKRKFNENVRVTGSDLCLETANSSKVHIPTIGSQDYQNEYEEDIQFSKYNIGRMSSIPYVANEGQLSSTSLCERLENKWYASPEGGCTTSSNIYCLGVLLFELLGHFDSERAHLAAMSDLHHRILPPVFLSENPKEAGFCLWLLHPEPSSRPTTREILQSEVINGLQELYSEELSSSIDQEDAESELLLHFLVSLKEHKQKDATKLVEEIKCLESDIEEVERRHDLGKSLVSSGLQNNYSCQKEIMPLKKEPLSVEMLPSISTISNANEMRLMKNISHLESAYFSMRSKVQLSETNTATHPDIDILRNRENWYVARKGEEQPERNDALGTFFDGLCKYACYSKFEVRGVLRNADFNNPANVICSLSFDRDEDYFASAGISKKIKIFEFSALCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGVVKLWDASTGQEFSQFTEHEKRAWSVDFSLVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLVGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASASACSLTLSGHANEKNFVGLSVADGYIACGSETNEVCTYYRSFPMPITSHKFGSIDPISGKETDDDHGQFVSSVCWRGKSDMLIAANSRGCVKVLQMV* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02240 1097 SMART WD40_4 951 989 IPR001680 GO:0005515
Rops1g02240 1097 SMART WD40_4 1056 1095 IPR001680 GO:0005515
Rops1g02240 1097 SMART WD40_4 865 905 IPR001680 GO:0005515
Rops1g02240 1097 SMART WD40_4 908 947 IPR001680 GO:0005515
Rops1g02240 1097 SMART WD40_4 822 862 IPR001680 GO:0005515
Rops1g02240 1097 SMART WD40_4 768 812 IPR001680 GO:0005515
Rops1g02240 1097 SMART WD40_4 1000 1039 IPR001680 GO:0005515
Rops1g02240 1097 ProSiteProfiles Trp-Asp (WD) repeats profile. 958 998 IPR001680 GO:0005515
Rops1g02240 1097 PRINTS G protein beta WD-40 repeat signature 976 990 IPR020472 -
Rops1g02240 1097 PRINTS G protein beta WD-40 repeat signature 849 863 IPR020472 -
Rops1g02240 1097 PRINTS G protein beta WD-40 repeat signature 892 906 IPR020472 -
Rops1g02240 1097 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 958 991 - -
Rops1g02240 1097 Pfam WD domain, G-beta repeat 868 905 IPR001680 GO:0005515
Rops1g02240 1097 Pfam WD domain, G-beta repeat 957 989 IPR001680 GO:0005515
Rops1g02240 1097 SUPERFAMILY WD40 repeat-like 781 1094 IPR036322 GO:0005515
Rops1g02240 1097 MobiDBLite consensus disorder prediction 1 29 - -
Rops1g02240 1097 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 755 1097 - -
Rops1g02240 1097 ProSiteProfiles Trp-Asp (WD) repeats profile. 829 871 IPR001680 GO:0005515
Rops1g02240 1097 ProSitePatterns Trp-Asp (WD) repeats signature. 976 990 IPR019775 -
Rops1g02240 1097 Gene3D - 757 1097 IPR015943 GO:0005515
Rops1g02240 1097 ProSitePatterns Trp-Asp (WD) repeats signature. 849 863 IPR019775 -
Rops1g02240 1097 MobiDBLite consensus disorder prediction 12 29 - -
Rops1g02240 1097 Gene3D Transferase(Phosphotransferase) domain 1 325 598 - -
Rops1g02240 1097 Coils Coil 621 648 - -
Rops1g02240 1097 PANTHER PROTEIN SPA1-RELATED 2 9 1097 IPR044630 GO:0009640
Rops1g02240 1097 ProSiteProfiles Trp-Asp (WD) repeats profile. 872 914 IPR001680 GO:0005515
Rops1g02240 1097 SUPERFAMILY Protein kinase-like (PK-like) 325 595 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02240 Rops-Chr1 44339178 44347340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02240 830 990 Miscellaneous Gene Families AT5G08390 24.848 9.30e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02240 K16240 - gmx:100784300 1785.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02240 1 44339178 44347340 Rops1g02240 1 44339178 44347340 ECH
Rops1g02240 1 44339178 44347340 Rops2g00479 2 6850922 6862805 PCT