Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02261 ATGGCCTCTCGTGTCAGCATTAACAACCTCACTACCACCTCTTCTTCACCCTATAGAATAAATTCCCCTCATTTTCAGCCACCTCCTAAGATTTCAAACTCATCATCATTCCAAAACGGTTCAATCATGATTCCTAAAAGCGTTTTGGTAACAGGCGGCGCCGGTTACATCGGCAGCCACACCGTTCTTCAGCTCTTGCTCGGCGGTTTCAAAACCGTCGTCGTCGACAACCTCGACAATTCCTCCGAGGTTGCCATCCATAGAGTCAGGGAGCTTGCTGGTGAATTTGGGAATAATCTTTCCTTTCATAAGGTAGACCTCCGGGACAGAGCTGCACTAGAGCAAATTTTTGTTTCCACAAAGTTTGATGCAGTTATACATTTTGCTGGACTGAAAGCAGTTGGTGAAAGTGTACAGAAACCGTTACTTTACTACAACAACAACTTGATTGGGACAATTACTCTATTGGAAGTCATGGCTGCACATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCTCTGTCAGCGATGAACCCATATGGACGGACTAAGCTTATCATTGAAGAATTTTGTCGCGATGTCTTCCGTGCTGAGCCAGATTGGAAAATAATATTATTGAGATACTTCAACCCAGTAGGTGCACACCCTAGTGGTTATATTGGGGAAGATCCTCGTGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAATTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCTTAAACTAGAAGATTCTAATATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAACATGCCTCTGGAAAGAAAATTCCACTCGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAGATAAAGCAGAAAGAGAACTTAAGTGGAAGGCAAAATATGGAATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGATCTCAGGATTCCACCGATTAA 1176 0.4345 MASRVSINNLTTTSSSPYRINSPHFQPPPKISNSSSFQNGSIMIPKSVLVTGGAGYIGSHTVLQLLLGGFKTVVVDNLDNSSEVAIHRVRELAGEFGNNLSFHKVDLRDRAALEQIFVSTKFDAVIHFAGLKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEFCRDVFRAEPDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTIDGTGVRDYIHVVDLADGHIAALLKLEDSNIGCEVYNLGTGKGTSVLEMVRAFEHASGKKIPLVMAGRRPGDAEIVYASTDKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGSQDSTD* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02261 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 383 IPR036291 -
Rops1g02261 391 MobiDBLite consensus disorder prediction 13 32 - -
Rops1g02261 391 PANTHER UDP-GLUCOSE 4-EPIMERASE 45 388 - -
Rops1g02261 391 FunFam UDP-glucose 4-epimerase 4 320 388 - -
Rops1g02261 391 PRINTS Nucleotide sugar epimerase signature 74 90 - -
Rops1g02261 391 PRINTS Nucleotide sugar epimerase signature 304 319 - -
Rops1g02261 391 PRINTS Nucleotide sugar epimerase signature 343 360 - -
Rops1g02261 391 PRINTS Nucleotide sugar epimerase signature 278 293 - -
Rops1g02261 391 Pfam GDP-mannose 4,6 dehydratase 49 372 IPR016040 -
Rops1g02261 391 Gene3D - 236 377 - -
Rops1g02261 391 Gene3D - 48 317 - -
Rops1g02261 391 FunFam UDP-glucose 4-epimerase 48 241 - -
Rops1g02261 391 NCBIfam UDP-glucose 4-epimerase GalE 48 382 IPR005886 GO:0003978|GO:0006012
Rops1g02261 391 CDD UDP_G4E_1_SDR_e 48 376 IPR005886 GO:0003978|GO:0006012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02261 Rops-Chr1 44715752 44720382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02261 47 361 Miscellaneous Gene Families AT4G00110 27.052 1.06e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02261 K01784 - gmx:100818509 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02261 1 44715752 44720382 Rops1g02261 1 44715752 44720382 ECH
Rops1g02261 1 44715752 44720382 Rops2g00451 2 6445522 6449439 PCT