LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g02207	ATGGACCAACCCCAGTTACTGTCTAAGATAACCATAGGTGATGGACATGGTGAAAATTCACCATACTTTGATGGCTGGAAGGCTTATGAAGAAGATCCCTTTCATCCCATCAAGAATCCTAATGGGGTTATCCAGATGGGTCTTGCAGAAAATCAGCTTGCTTCTGACTTAGTTCAAAATTGGATAATGAGTAATCCGAAGGCTTCAATTTGCACTCCCGAAGGAGTGCGTCATTTCCAGGCCATAGCTAACTTTCAGGATTATCATGGTTTGCCCGAGTTCAGAGAAGCTGTGGCTAAATTCATGGCAAGAACGAGAGGAAATAGAGTCACTTTTGATCCTGACCGTATTGTTATGAGCGGTGGAGCAACCGGAGCACATGAGGTCACTGCTTTTTGTTTGGCAGATCCCGGTGATGCATTTTTGGTGCCCACTCCTTATTATCCTGGTTTTGACAGGGATTTGAGGTGGAGAACAGGAGTTCAACTTGTTCCAGTTATCTGTGAAAGTTCTAATTATTTCAAGTTGACAAGGAAAGCATTGGAAGCTGCATTTGAGAAAGCCAAAGAGGATAACATCATAATAAAGGGCTTGCTTATTACCAATCCATCCAACCCATTGGGAACTATCATGGATAGAGAGACATTAAGAACAGTGGTGAGTTTCATTAATGAAAAGCACATCCACCTTGTATGTGATGAAATATATGCTGCTACAGTTTTTTGGCATCCTGGTTTCACAAGCATCGCTGAGATAATAGAGGAAGACACAGATATCAAATGTAATCGTGACCTCATCCATATTGTTTATAGCCTTTCAAAGGATATGGGGTTCCCTGGCTTTAGAGTTGGCATTATATACTCTTACAATGATGCAGTTGTCAATTGTGCTCGCAAAATGTCAAGCTTTGGATTAGTTTCCTCACAGACCCAATATCTTATAGCATCAATGCTATCAGATGATGAGTTTGTGGAAAGGTTCCTTAAAGAGAGTGCAAAGAGATTGGCCAAAAGGTATGGAATTTTCTGTAGGGGGCTTGCCCAAGTTAGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTTTATGGATGGATTTGCGTCGTCTTCTTAAGAAGCCAACATTTGAAGCAGAAATGGAACTTTGGAAAGTGATCATCCATCAAGTTAAGATCAATATTTCCCCTGGTTCTTCTTTTCATTGTTCTGAACCAGGTTGGTTCAGGGTATGCTATGCAAACATGGATGATAGAGCTGTGGAAGTTTCTTTGACAAGAATGCGCACCTTTGTGCGTCAAAGCACTGAGGCCATGGTAGAGGAAAAGAAACATTGTAGCCAGAGAAACTTAAGGCTAAGCTTCTCGTTCAGAAGGCTGGATGATTTCTTGATGTCACCTCATTCCCCTATTCCTCAATCACCTCTTGTTAAAGCTGCTACCACTTGA	1443	0.4158	MDQPQLLSKITIGDGHGENSPYFDGWKAYEEDPFHPIKNPNGVIQMGLAENQLASDLVQNWIMSNPKASICTPEGVRHFQAIANFQDYHGLPEFREAVAKFMARTRGNRVTFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVICESSNYFKLTRKALEAAFEKAKEDNIIIKGLLITNPSNPLGTIMDRETLRTVVSFINEKHIHLVCDEIYAATVFWHPGFTSIAEIIEEDTDIKCNRDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSSQTQYLIASMLSDDEFVERFLKESAKRLAKRYGIFCRGLAQVSIKCLQSNAGLFLWMDLRRLLKKPTFEAEMELWKVIIHQVKINISPGSSFHCSEPGWFRVCYANMDDRAVEVSLTRMRTFVRQSTEAMVEEKKHCSQRNLRLSFSFRRLDDFLMSPHSPIPQSPLVKAATT*	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g02207	480	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	14	431	-	-
	Rops1g02207	480	Gene3D	Aspartate Aminotransferase, domain 1	32	425	IPR015422	GO:0003824
	Rops1g02207	480	SUPERFAMILY	PLP-dependent transferases	16	431	IPR015424	-
	Rops1g02207	480	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	271	284	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Rops1g02207	480	Gene3D	-	66	320	IPR015421	GO:0003824
	Rops1g02207	480	Pfam	Aminotransferase class I and II	44	423	IPR004839	GO:0009058\|GO:0030170
	Rops1g02207	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	192	216	-	-
	Rops1g02207	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	79	95	-	-
	Rops1g02207	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	297	320	-	-
	Rops1g02207	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	228	251	-	-
	Rops1g02207	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	265	289	-	-
	Rops1g02207	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	46	72	-	-
	Rops1g02207	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	116	136	-	-
	Rops1g02207	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	138	159	-	-
	Rops1g02207	480	CDD	AAT_like	84	417	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g02207	Rops-Chr1	43775572	43777901	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g02207	K20772		-	gmx:100793020	856.284

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops1g02207	1	43775572	43777901	Rops1g02207	1	43775572	43777901	ECH
	Rops1g02207	1	43775572	43777901	Rops2g00510	2	7424398	7427319	PCT