Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02192 ATGGGACTCCTTTATCTGAAATGGACGTCAGGGTCCATGGTTTTGGGGAAGGCAGAGTTAACTAGAAGGGAAGGTACCTGTTTTAACATGTCTTCACTGTGCAGTAGTTCCACCCTTCATAAGTTTTTGCTCAAAGATAGAGCAGGAGTAAGATGCAAACGAGGGGAAAGATTTATTGTTGCTACGGGGCCTGCTATAGAGGCTCCTGTTATTGCCACAGAGCCATTGACAAAAGATGATCTTATTGACCATTTAGTATCTGGTTGCAAGCCCAAGGAAAAGTGGAGCATAGGCACAGAGCATGAGAAGTTTGGTTTTGAGTTTGAAACTTTACGTCCAATCAAATACAAACAAATATCAGCTTTACTCAATGGCATTGTTAAAAGGTTTGATTGGGATAAAATATTGGAAAGTAACAACATCATAGGACTCAAAAAGGGCAAGCAAAGCATATCATTAGAGCCTGGTGGTCAAATTGAGCTTAGTGGGGCACCTGTCAAAGCATTGCATCAGACTTGTGATGAGATTAATTCACACCTCTATCAGGCTAAAACTGTAGCAGAGGAAATGGGAATTGGATTTTTGGGATTAGGTTTCCAGCCTAAATGGAGAGTGGAAGACATACCTCGAGTTCCTAAGGTACGGTACAACATTATGCAAAATTACTTCCATAGATTTGGCTTACCTGGAATAGACCCATTGTTAAGGACATGCTCTGTTCAGGTCAACCTGGATTTCAGTTCTGAAGCAGACATGATCAAGAAAATGCGTGCCAGTCTTGCTTTGCAGCCTTTAGCAGCAGCCTTATTTGCAAATTCACCTTTCAAGGAAGGAGTTCCAAGTGGTTACCTCAGCATAAGAAGCCATGCGGTGGATCAGGTTGACAAACGTCGTACTGGCATGCTCCCCTTTGTTTTCTGTGACACTTTTGGGTTTGAGCAGTTTGTTGATTATGCTCTTAATGTGCCGATGATGTTTGTTTATCGAAGAAACAAGTATATTGACTGTGGTGGCATGTCATTCCGGGACTTCATGGCTGGTAAACTCCCTGTCCTTCCAGGTCAGGTGCCAACACTCAGTGACTGGGAAAATCATCTCACAACCATATTTCCTGAGGTCAGGCTAAAGAGATACATGGAAATGAGAGGTGCTGATGTGGGCCCTTTGAATATGTTATGTGCTCTGCCAGCATTTTGGGTAGGTCTATTATATGATGAGGTTTCACTACTTAATGTTCTAGATATGATCGCTGATTGGACCCCTGAAGACAGACAGTATTTAAGGAATAAGGTTCCTGTGACTGGTTTAAGGACTCCATTTCAAGGTAGATTGCTGCAGCATGTTGCTGAAGATGTGTTGAAGTGGGCAAAGGATGGCTTGGACAGAAGATGCTTAAATGAATCCGCTTTTCTGGATCCATTGATAGAAGTTGTTAGCACAGGTTTGACACCAGCTGACAAGCTTTTGGAGATGTATAATAACAAGTGGGGAAACAATATGGATCGTGTGTTCAGAGAGCGCTGCTACTAA 1530 0.4255 MGLLYLKWTSGSMVLGKAELTRREGTCFNMSSLCSSSTLHKFLLKDRAGVRCKRGERFIVATGPAIEAPVIATEPLTKDDLIDHLVSGCKPKEKWSIGTEHEKFGFEFETLRPIKYKQISALLNGIVKRFDWDKILESNNIIGLKKGKQSISLEPGGQIELSGAPVKALHQTCDEINSHLYQAKTVAEEMGIGFLGLGFQPKWRVEDIPRVPKVRYNIMQNYFHRFGLPGIDPLLRTCSVQVNLDFSSEADMIKKMRASLALQPLAAALFANSPFKEGVPSGYLSIRSHAVDQVDKRRTGMLPFVFCDTFGFEQFVDYALNVPMMFVYRRNKYIDCGGMSFRDFMAGKLPVLPGQVPTLSDWENHLTTIFPEVRLKRYMEMRGADVGPLNMLCALPAFWVGLLYDEVSLLNVLDMIADWTPEDRQYLRNKVPVTGLRTPFQGRLLQHVAEDVLKWAKDGLDRRCLNESAFLDPLIEVVSTGLTPADKLLEMYNNKWGNNMDRVFRERCY* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02192 509 NCBIfam glutamate--cysteine ligase 75 509 IPR011556 GO:0004357|GO:0006750
Rops1g02192 509 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 41 509 IPR035434 GO:0004357|GO:0006750
Rops1g02192 509 Pfam Glutamate-cysteine ligase family 2(GCS2) 125 419 IPR006336 GO:0004357|GO:0042398
Rops1g02192 509 SUPERFAMILY Glutamine synthetase/guanido kinase 87 496 IPR014746 GO:0003824
Rops1g02192 509 PIRSF GCL 64 509 IPR035434 GO:0004357|GO:0006750
Rops1g02192 509 Gene3D - 61 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02192 Rops-Chr1 43495835 43500146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02192 K01919 - gmx:100775188 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02192 1 43495835 43500146 Rops2g00565 2 8230359 8238180 PCT