Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02133 ATGGAGGATTCATTCTCTTCTGAGCATGTTCACCGCATGATAAACTCCAATCACTTTTACAAGTCACCTTCTAGAACAATCTACTCTGATAGGTTCATACCATGCAGATCCTCTTCCAAATTCGCCCTCTTTAATGTTTCAGAGGACAGTTCCAACACCTACAACAACCTTTTACGCACTGCATTGTTTGGACCTCATGCTCCTGTTACTCCCGACAAACGGACCCCTAATATTTTCCGTTACAAAACGGAGACTCGTCACTCCTTGCACTCCCTCTCCCCTTCCCCTTCCCCTTTAACGTTCAACGATGAATGTGGTGGGGTTATTCATGCGCCCGTTAAGGCTCCTCGCAAGGTTCCATTATTACCTTTTAAGGTTCTGGATGCACCTGCGCTGCAAGATGATTTTTATCTCAACCTTGTGGACTGGTCTTCCCATAATGTCTTGGCTGTAGCTCTGGGTACCTGTGTTTATTTGTGGAATGCTTCTAGCAGCGGGGTAACTAAATTATGTGACTTGGGGGTTGACGACTGTGTTTCTTCGGTTGGCTGGGCTCAGCGTGGTACCTACCTTGCTGTTGGAACTAGCACTGGTAAAGTGCAGGTTTGGGATGCATCTCAATGTAAGATGATAAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGCCGGGATAAAATCATTTATCAACGAGATATACGAGCACAGGAAGATTTTGTCAGTAAACTGTCTGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCTGGAGGAAACGACAATAGATTGCTTGTTTGGAATCAACACTCAACCCAGCCCATACTGAAGTATTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATGTTCATGGACTTCTTGCATCAGGAGGAGGAACTGCAGACAGATGTATTCGATTCTGGAATACAACCACAAACTCAAACTTAAGCTGCATAGACACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTCAATGAACTGGTAAGCACACATGGCTACTCCCAGAATCAGATAATAGTTTGGAGATACCCCACCATGTCAAAGCTAGCAACTCTTACAGGCCATACTTATAGAGTTCTTTATCTTGCCATCTCTCCTGATGGGCAGACTATTGTCACTGGAGCTGGAGATGAAACTCTTAGGTTTTGGAATGTATTCCCTTCCCAGAAATCTCAGAATACTGAGAGCGAAATTGGAGCATCATCTCTTGGAAGAACCATTATTAGATGA 1329 0.4447 MEDSFSSEHVHRMINSNHFYKSPSRTIYSDRFIPCRSSSKFALFNVSEDSSNTYNNLLRTALFGPHAPVTPDKRTPNIFRYKTETRHSLHSLSPSPSPLTFNDECGGVIHAPVKAPRKVPLLPFKVLDAPALQDDFYLNLVDWSSHNVLAVALGTCVYLWNASSSGVTKLCDLGVDDCVSSVGWAQRGTYLAVGTSTGKVQVWDASQCKMIRTMEGHRLRVGALAWSSSLLSSGGRDKIIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQHSTQPILKYCEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNSNLSCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSQKSQNTESEIGASSLGRTIIR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02133 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 418 - -
Rops1g02133 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 296 IPR001680 GO:0005515
Rops1g02133 442 ProSitePatterns Trp-Asp (WD) repeats signature. 404 418 IPR019775 -
Rops1g02133 442 Pfam Anaphase-promoting complex subunit 4 WD40 domain 174 228 IPR024977 -
Rops1g02133 442 Pfam WD domain, G-beta repeat 381 417 IPR001680 GO:0005515
Rops1g02133 442 Pfam WD domain, G-beta repeat 252 287 IPR001680 GO:0005515
Rops1g02133 442 Pfam WD domain, G-beta repeat 293 332 IPR001680 GO:0005515
Rops1g02133 442 SUPERFAMILY WD40 repeat-like 124 427 IPR036322 GO:0005515
Rops1g02133 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 213 IPR001680 GO:0005515
Rops1g02133 442 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 17 437 IPR033010 GO:0010997|GO:0097027|GO:1904668
Rops1g02133 442 Gene3D - 113 421 IPR015943 GO:0005515
Rops1g02133 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 426 IPR001680 GO:0005515
Rops1g02133 442 SMART WD40_4 164 204 IPR001680 GO:0005515
Rops1g02133 442 SMART WD40_4 290 332 IPR001680 GO:0005515
Rops1g02133 442 SMART WD40_4 207 244 IPR001680 GO:0005515
Rops1g02133 442 SMART WD40_4 248 287 IPR001680 GO:0005515
Rops1g02133 442 SMART WD40_4 378 417 IPR001680 GO:0005515
Rops1g02133 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 287 - -
Rops1g02133 442 FunFam FIZZY-related 2 isoform 1 120 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02133 Rops-Chr1 42587648 42593474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02133 191 420 Miscellaneous Gene Families AT5G08390 21.459 4.71e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02133 K03364 - gmx:100780928 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02133 1 42587648 42593474 Rops1g02133 1 42587648 42593474 ECH
Rops2g04185 2 76262139 76269489 Rops1g02133 1 42587648 42593474 PCT