Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01981 ATGTACAGAGAGCGAGGAGGCGTTGGATCCAAATCCGAGGTTGCTTCCGTTGATCGGAAACGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCACCGTCCACATCAAGGGCCATCAACGGCAAGGATAGGTCCTCTTCTTCCATCTTAACCGCCAAGGATCACAGGGACCCTCGTTCCAACGCACCTCCCCCTATTTTGAAGAATTCCAACGCTTCCGATGAGGAATCCGAGACAGACAGTGAAGAGTCTGATGTTAGTGGTTCCGATGGAGACGACACGTCTTGGATCTCATGGTTCTGTAATTTGAGAGGAAATGAGTTCTTTTGTGAGGTTGATGATGATTACATCCAAGACGACTTCAACCTGTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCTCTTGATTTAATTTTGGATGTTGAATCCTCCCATGGTGAAATGTTTACGGATGAACAAAATGAGTTAATTGAATCAGCGGCTGAGATGCTTTATGGTCTGATTCATGCCCGGTATATATTGACAAGCAAAGGAATGGCCGCCATGTTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCGGGACAACCTTGCCTTCCAGTTGGTCAGTCAGACATTCCGAGATCTAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAGTATCCTTTTATGCATTATCGAACAATGTGTGGGTTTGAGTTGA 768 0.4518 MYRERGGVGSKSEVASVDRKRINDVLDKQLERSSPSTSRAINGKDRSSSSILTAKDHRDPRSNAPPPILKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGEMFTDEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGSILLCIIEQCVGLS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01981 255 PRINTS Casein kinase II regulatory subunit family signature 114 128 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 PRINTS Casein kinase II regulatory subunit family signature 194 215 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 PRINTS Casein kinase II regulatory subunit family signature 169 190 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 PRINTS Casein kinase II regulatory subunit family signature 97 113 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 PRINTS Casein kinase II regulatory subunit family signature 216 237 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 SMART CK_II_beta_2 97 255 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 MobiDBLite consensus disorder prediction 1 93 - -
Rops1g01981 255 MobiDBLite consensus disorder prediction 14 28 - -
Rops1g01981 255 PANTHER CASEIN KINASE II SUBUNIT BETA 76 243 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 Pfam Casein kinase II regulatory subunit 97 241 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 FunFam Casein kinase II subunit beta 195 246 - -
Rops1g01981 255 ProSitePatterns Casein kinase II regulatory subunit signature. 198 229 IPR000704 GO:0005956|GO:0019887
Rops1g01981 255 MobiDBLite consensus disorder prediction 29 49 - -
Rops1g01981 255 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 90 194 IPR016149 GO:0005956|GO:0019887
Rops1g01981 255 FunFam Casein kinase II subunit beta 90 194 - -
Rops1g01981 255 Gene3D - 195 246 - -
Rops1g01981 255 SUPERFAMILY Casein kinase II beta subunit 95 240 IPR035991 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01981 Rops-Chr1 40067966 40069629 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01981 K03115 - gmx:100799304 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01981 1 40067966 40069629 Rops1g01981 1 40067966 40069629 ECH
Rops1g01981 1 40067966 40069629 Rops2g04344 2 79190897 79194171 PCT