Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01670 ATGAGCGGAGCACTTCTATTCATAAAGGAAGATCTTGGAATCAGTGACCTACAAGAACAGTTACTGGTAGGCATGTTTCAAATGTGCACACTACCTGCATGCATGGCTGCTGGAAGAACATCTGATTATATAGGCCGCCGCTTCACCATCATCCTAACTTCCATCACCTTCTTATTGGGCTCCACTCTAATGGGTTATGGTCCATCTTATCCAATCTTAATGATTGGATATTGTATATCTGGAATTGGTGTGGGTTTTGCACTAACTACAGCACCAACTTACTGTGCCGAGATTTCACCTCCTTCTAATAGAGGTTTTCTCACCTCTCTCCCAGAATTTTCTATCAACTTGGGACTCTTACTTGGCTATGTGTCAAGCTACTTATTTGGGAAATTGTCCCTGAAACTTGGATGGAGGATGATGCTTGCTGTTCCTGCACTTCCTTCACTTGGGGTAATCATTCTCATGTTAAAATTGGTAGAGTCCCCAAGGTGGTTAATCATGCAAGGACGTGTTGGTGAGGCAAGGAAAGTGCTTTTACTAGTCTTTGATACAAAGGAAGAAGCTGAACAACGCTTGAAGGAAATAAAAGGTGCTGTTGGGATTGACAAAAATTGCACCCAAGACATTGTCCAGGTTCCAAAGAAAAGTGGGAGTAGTGGTGGTGGAGCTCTAAAGGAATTGTTTTGTAAACCTTCACCTCCAGTCCGTAGGATACTAATTGCAGCCATTGGACTTCATGTGTTCATGCATATTAATGGATTTGGGGCTATTTTGTTCTATGCTCCAAGGATCTTTGAGAGAACAGGAATCACTGACAAGAGCAAACTCCTGCTAGCCACAGTTGGTATGGGTGTCTGCAAAGTTGTATTTGCATTCATATCAATTTTCTTGGTGGATAGATTTGGGAGGAGGATTCTCTTGTTGATTAGTTCAGGAGGTATGGTTGTGAGCTTGTTAGGTTTGGGTATTTGCTTTACCATGGTGGAGAACTCTACAGAAAATTTATCTTGGCCCATAAGCTTTACCATTGTTGCTACTTGCATCTTTGTGGCTTTTCTGTCTATTGGAATTGGGCCTGTGACATGGGTTTATAGTTCTGAGATACTTCCCTTGAGGTTGAGAGCACAAGGTCTTGGGGTTTGTGTGGCTTTGAACAGAATCACAAATATGGCAGTGATTACGAGTTTCATTTCAGTTTATAAAACGATAACAATGGGTGGGACTTTCTTCGTGCTCACCATTACCAATGCTTTGGCTTGGTGCTTCTACTATATCTTCTTGCCTGAAACTAAAGGAAGATCTTTGGAAGATATGGAGATTATCTTTGGGAAAAATTCCAAGTCAGAGATACAAACAAAGAAGATGAATATTGACACAACGGTTGAAATTACCTCCGCATAA 1404 0.4138 MSGALLFIKEDLGISDLQEQLLVGMFQMCTLPACMAAGRTSDYIGRRFTIILTSITFLLGSTLMGYGPSYPILMIGYCISGIGVGFALTTAPTYCAEISPPSNRGFLTSLPEFSINLGLLLGYVSSYLFGKLSLKLGWRMMLAVPALPSLGVIILMLKLVESPRWLIMQGRVGEARKVLLLVFDTKEEAEQRLKEIKGAVGIDKNCTQDIVQVPKKSGSSGGGALKELFCKPSPPVRRILIAAIGLHVFMHINGFGAILFYAPRIFERTGITDKSKLLLATVGMGVCKVVFAFISIFLVDRFGRRILLLISSGGMVVSLLGLGICFTMVENSTENLSWPISFTIVATCIFVAFLSIGIGPVTWVYSSEILPLRLRAQGLGVCVALNRITNMAVITSFISVYKTITMGGTFFVLTITNALAWCFYYIFLPETKGRSLEDMEIIFGKNSKSEIQTKKMNIDTTVEITSA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01670 467 Pfam Sugar (and other) transporter 15 443 IPR005828 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 PRINTS Sugar transporter signature 250 260 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 PRINTS Sugar transporter signature 344 365 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 PRINTS Sugar transporter signature 74 93 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 PRINTS Sugar transporter signature 367 379 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 Gene3D MFS general substrate transporter like domains 1 447 IPR036259 -
Rops1g01670 467 SUPERFAMILY MFS general substrate transporter 2 440 IPR036259 -
Rops1g01670 467 FunFam probable polyol transporter 4 1 446 - -
Rops1g01670 467 ProSitePatterns Sugar transport proteins signature 1. 37 54 IPR005829 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 ProSitePatterns Sugar transport proteins signature 1. 295 312 IPR005829 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 ProSitePatterns Sugar transport proteins signature 2. 79 104 IPR005829 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 456 - -
Rops1g01670 467 NCBIfam sugar porter family MFS transporter 14 438 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops1g01670 467 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 432 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01670 Rops-Chr1 35212563 35213966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01670 1 458 Organic Solute Cotransporters AT2G18480 53.233 1.16e-170 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01670 - - gmx:102662503 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03383 2 62204533 62206797 Rops1g01670 1 35212563 35213966 PCT