Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03773 ATGGCAGCAACAATGGCGATGATCAACTTGACATGCATGAACACATGCTCACCAAAGTTGCAAAACCCCACCAACACCAAGCTTACAACTTCAAAGCCCACAACCTCCCTCATTTCCTTTCAGAACCTTAAAAAAGCAGCTGAAAATGTTAACGTGTGCACTTCCACTGCCATTGCAGGGGCCATATTTTGGTCCCTTGGAAGCAGTGATGCAGCTTTGGCTGCTCAACAAATAGCTGAAATAGCAGAAGGGGATAACCGTGGGTTGGCACTGTTGTTGCCTTTGATTCCAGCCATAGCTTGGGTGCTGTTCAACATTCTGCAGCCAGCTTTGAACCAAATAAACAGGATGAGGAGTGGCAAGGGGTTGATCATCGGGCTTGGGCTTGGTGGGTTGGTGGGCTCAGCACCAGATGCATCAGCATTTGAGATAGCTGAAGCTGCAACAAGTGACAACAGGGGGCAGCTTCTGTTGTTTGTGGTTACCCCAGCTATTCTTTGGGTGCTTTACAACATTTTGCAGCCGGCTCTCAACCAGATCAACAGGATGAGATCCGAGTAA 561 0.4831 MAATMAMINLTCMNTCSPKLQNPTNTKLTTSKPTTSLISFQNLKKAAENVNVCTSTAIAGAIFWSLGSSDAALAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSGKGLIIGLGLGGLVGSAPDASAFEIAEAATSDNRGQLLLFVVTPAILWVLYNILQPALNQINRMRSE* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03773 186 Hamap Photosystem II protein Y [psbY]. 85 119 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Rops11g03773 186 Pfam Photosystem II protein Y (PsbY) 151 183 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Rops11g03773 186 Pfam Photosystem II protein Y (PsbY) 85 117 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Rops11g03773 186 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 185 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03773 Rops-Chr11 71415050 71415818 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03773 K02723 - vvi:100252545 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03773 11 71415050 71415818 Rops11g03773 11 71415050 71415818 ECH
Rops2g00995 2 13990191 13991040 Rops11g03773 11 71415050 71415818 PCT