Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03559 ATGGCAGAAGCAGCACAAAGCAGCAACAATAGAGGAGGACCAAGATGGTCCCTCAATGGAATCACAGCTCTTGTCACTGGTGGCACACGTGGGATCGGGCATGCCATAGTGAATGATCTAGCTGCTTTTGGTGCTACCATACACACTTGTTCCAGAAACCAAACTGAGCTCAATAAGTGCTTAGAAGAATGGAAAAGTCAAGGCTTTTTGGTCACTGGGTCGGTTTGTGATGTGTCCTCTCCACCTCAGAGAGAGAAGCTCATGCAGGAAGTGGCATCCACCTTCAATGACAAGCTCAACATCTTTGTGAACAATGTGGGAACAAACTTTAGAAAGCCAACCATTGAGTACACTGATAAAGAATATTCAGAGCTGATGACAGTTAATTTAGACTCTGCATTCCATCTAAGCCAACTTGCATATCCTCTTCTAAAAGCATCTGGAATGGGAAGCATTGTGTTCCTCTCATCTGTTGCAGGTGTGGTGAGCTTGGGTACTGGATCTGTCTATGCAGCATGTAAAGCTGCAATAAATCAGCTTACAAAATATTTGGCTTGTGAATGGGCAAAAGACAACATAAGGAGTAATTGTGTTGTTCCATGGACAACCAGAACCCCACTTATAGAACATTTGTTACAAAACCAAAAGTTTGTGGATGATGTTATGTCTCGAACTCCTATTAAGCGCATTGCAGAACCTGAAGAAGTGTCATCTTTGGTGACTTTCCTTTGCCTGCCAGCTGCTTCCTACATCACTGGACAGGTTATTTGTGTTGATGGAGGATTAACAGTGAATGGATTTCAACCCAGCATGAGAATTACCTGA 825 0.4327 MAEAAQSSNNRGGPRWSLNGITALVTGGTRGIGHAIVNDLAAFGATIHTCSRNQTELNKCLEEWKSQGFLVTGSVCDVSSPPQREKLMQEVASTFNDKLNIFVNNVGTNFRKPTIEYTDKEYSELMTVNLDSAFHLSQLAYPLLKASGMGSIVFLSSVAGVVSLGTGSVYAACKAAINQLTKYLACEWAKDNIRSNCVVPWTTRTPLIEHLLQNQKFVDDVMSRTPIKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVNGFQPSMRIT* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03559 274 Gene3D - 13 266 - -
Rops11g03559 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 IPR002347 -
Rops11g03559 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 IPR002347 -
Rops11g03559 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 IPR002347 -
Rops11g03559 274 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Rops11g03559 274 PRINTS Glucose/ribitol dehydrogenase family signature 191 208 IPR002347 -
Rops11g03559 274 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Rops11g03559 274 PRINTS Glucose/ribitol dehydrogenase family signature 170 189 IPR002347 -
Rops11g03559 274 PRINTS Glucose/ribitol dehydrogenase family signature 22 39 IPR002347 -
Rops11g03559 274 PRINTS Glucose/ribitol dehydrogenase family signature 97 108 IPR002347 -
Rops11g03559 274 Pfam Enoyl-(Acyl carrier protein) reductase 29 263 - -
Rops11g03559 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 265 IPR036291 -
Rops11g03559 274 FunFam Short-chain dehydrogenase reductase 7 268 - -
Rops11g03559 274 PANTHER TROPINONE REDUCTASE 15 266 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03559 Rops-Chr11 68027664 68031642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03559 15 269 Miscellaneous Gene Families AT2G29290 63.035 4.46e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03559 K08081 - gmx:100791265 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03559 11 68027664 68031642 Rops11g03552 11 67905143 67907053 ECH
Rops11g03559 11 68027664 68031642 Rops11g03559 11 68027664 68031642 ECH