Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03554 ATGCAAAGAGGAGTAACAGAATCAGATAACAAAGGAAAAAAGTGTATGAATTCGATTGTTAAACCAAGGGAGAATAAGATGAATATTTCTCGCTTGGAACCTTGTCATGACCAAGTTAAAGTATCCAAATTCCCTTTTGTCCCAGAAAAACTAGGAGATATGGTCATAGTCTTAGTAAGGATTGGCATACTTGTCTGCCTTATAGCATCTGTATCACTTGCTCTCCACTCAGCATTCTCTAAACCAGACCGGTGGTTCCCATTACCAGAGCATATACATGTCCCCCAGAATGCTTCATTCATTGACAATGGACCCACAAATATCTCACATATTCTATTTGGCATTGCTGGTTCAGCAAACACATGGCATGACCGTAGCAACTACAGTAAGCTATGGTGGAATCCAAACACCACTCGAGGTTTTGTTTGGCTTGACAAGGAACCTGATAATTTGCACCCTGACATATTAGTTCCATATCAAATCTCACAGGGCTGGACTCGGTTCAAGTTCATACACTCAGCATCTGCAGTTCGGATAGCACGGATAGTTTATGAGAGCTTTAAACTTGGTTTGCCAAATATTAGGTGGTTTGTAATGGGAGATGATGATACAGTGTTTTTTCCTGAGAACTTAGTTACAGTGTTAGGAAAATATGATCACAATCAAATGTATTATATTGGTGGGCATTCTGAGAGTGTGGAGCAAGATGTGATGCATTCTTATGACATGGCTTTTGGTGGTGGTGGATTTGTGGTCAGTTATGCATTAGCAGCTCAACTAGCCAAAATAATGGATGGTTGTCTTCATAGATACTTCTATTTTTATGGTTCTGATCAAAGGGTCTGGGCATGTGTGAATGAACTTGGGGTGCCTCTTACCAGAGAAAGTGGATTTCACCAGCTTGACATAAGAGGGAATCCATATGGTCTTTTAGCAGCACACCCCTTGGCACCACTTGTATCACTCCATCACCTTGATCAATTGAATCCATTGTTTCCCCACCACTCTCAAACACATTCATTGAAAAAGCTCATCAGTGCATATCACCTTGACCCTGCCCGGATAGTGCAGCAAAGTTTTTGCTATGATCATAAGCGTCAATGGTCAATATCTATTTCATGGGGTTACACGGTACAAATCTATACAACATTGTTGATAGCAGCAGATTTGCAGATGCCATTGCAAACATTTCGAACATGGCGAAGTTGGAGTGATGGTCCCTTTACATTTAATACTCGACCTATGAGCTCTGACCCATGTCAGCAACCAGTTACATTTTTCCTGGACCATGTTAAAAAGGTGGGCACAAGTGGAAGTATCACTGTCTATAAGAGATATGCAGCCAAGGAAGCAAAGAAGTGCAAGAGACCAGACATTAAATCCATGGAAGTGCAGAGAATTAGAGTTTCTGCCTTGAAGCTGGGCCCAGAATATTGGAAGAATGTACCACGTAGGCAGTGCTGCCAACTTATGGATGGTGGAAGCATAAAGGATGGCGTTATGCATGAAGATCTTCCCTCATTGCTTCTACATTTTTGTGTTGCGCTCCTCATCACCTGTCTGTATGCATTTGATGTTCCAATGCTGAGAACTGAATTTGCAGACTTGGTAATCTTTGAGTATTGTCGTGCAGAGCCTTCAGACCATGGCTCCTGGAGATAA 1662 0.4176 MQRGVTESDNKGKKCMNSIVKPRENKMNISRLEPCHDQVKVSKFPFVPEKLGDMVIVLVRIGILVCLIASVSLALHSAFSKPDRWFPLPEHIHVPQNASFIDNGPTNISHILFGIAGSANTWHDRSNYSKLWWNPNTTRGFVWLDKEPDNLHPDILVPYQISQGWTRFKFIHSASAVRIARIVYESFKLGLPNIRWFVMGDDDTVFFPENLVTVLGKYDHNQMYYIGGHSESVEQDVMHSYDMAFGGGGFVVSYALAAQLAKIMDGCLHRYFYFYGSDQRVWACVNELGVPLTRESGFHQLDIRGNPYGLLAAHPLAPLVSLHHLDQLNPLFPHHSQTHSLKKLISAYHLDPARIVQQSFCYDHKRQWSISISWGYTVQIYTTLLIAADLQMPLQTFRTWRSWSDGPFTFNTRPMSSDPCQQPVTFFLDHVKKVGTSGSITVYKRYAAKEAKKCKRPDIKSMEVQRIRVSALKLGPEYWKNVPRRQCCQLMDGGSIKDGVMHEDLPSLLLHFCVALLITCLYAFDVPMLRTEFADLVIFEYCRAEPSDHGSWR* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03554 553 Pfam Protein of unknown function, DUF604 235 488 IPR006740 -
Rops11g03554 553 FunFam Fringe-related protein-like 99 349 - -
Rops11g03554 553 Gene3D - 101 364 - -
Rops11g03554 553 PANTHER FRINGE-RELATED 57 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03554 Rops-Chr11 67932906 67937919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03554 36 516 Glycosyltransferase AT3G11420 56.513 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03554 - - gmx:100802549 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03554 11 67932906 67937919 Rops11g03554 11 67932906 67937919 ECH
Rops11g03554 11 67932906 67937919 Rops8g01758 8 39373836 39377015 ECH