Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02561 ATGCACCACAATTGGAAGCACAAGAAACAAGTTGAAGCTATGGATAGCGGTGAGTACTCTCCATTGTTTGAGACAAGAAGGGGCAGAGGAAGACTCATCTATAAGCTCTTTGCAATCTCATTATTTGTGGCTATATGCTTCATCTGGGTTTACAGATTTAGCCACATGGGTGAAGAAGGAAAATGGGTTTGGCTTGGTTTGCTTGGGGCAGAGCTATGGTTTGGCTTTTATTGGGTCCTCACTCAAGCTCTCAGATGGAACACTGTGTTCAGGAAAACCTTCAAGAACAGACTCTCTCAAAGATATGAGAATAAGTTACCAGGAGTGGACATCTTTGTGTGCACAGCAGATCCAGAGATTGAACCACCCAAGATGGTGATTAACACTGTGCTATCAGTGATGGCTTATGATTATCCAGCTGAGAAGATGAGTGTGTATCTCTCAGATGATGCAGGGTCTGAAATCACCTTCTATGCTCTGTTAGAGGCGGCTAGTTTTGCAAAGCATTGGCTTCCATTCTGCAAGAGGTTCAAGGTGGAGCCCAGGTCACCTGTTGCATATTTTAATAGCATGGTCTCATCAACTTGCCCAGGTGATACTAATCTAGCCAAAGAGTTGGCAGCTGTAAAGGTATTGTACGACGAAATGGAAAGACGAATTGAAGATGCCACCAAGTTGAATGAAGTCCCCAAAGAAGCACGTTCAAAGCACAGGGGCTTTTCTCAATGGGATTCATATTCTTCTAGACGTGACCATGCCACAATTCTTCAAATAGTGCTTCATAAAAAGGACCCCAATAACTCTAAGGATGTAGAAGGGTTCAATTTGCCAACTCTGGTGTATTTGGCTCGCGAGAAGAGGCCCCAGTATCCCCACAACTTCAAAGCTGGAGCTATGAATTCATTGTTAAGGGTGTCTTCAAATATCAGCAATGGGAAAATCATTCTAAATGTAGACTGTGACATGTACTCAAACAATTCACAATCTGTGAGAGATGCTCTCTGTTTTTTCATGGATGAAGAGAAAGGCCATGGAATTGCTTATGTGCAGTTTCCCCAGATTTTTGAGAATGTTACCAAGAATGATTTATATGGGAGTGCTCTACTAGCAATTAGCGAGGTGGAATTCCATGGTGCGGATGGTTATGGTGGTCCTTTGTACATAGGAACTGGCTGCTTTCACAGGAGAGACACTCTCTGTGGGTTGATGTTCAGTGATCAATACAGGAATGATTGGAAGAGTGAAGATGACAAGTTCATAGAAGCAAGCTTGCAAAAACTAGAAGAAAGTTCAAAGGATCTTACAAGCTGCACCTATGAGGAAAACACACTATGGGGAAAAGAGATGGGTTTGAAATATGGTTGTGCAGTGGAGGATGTGATAACTGGATTGTCTATACAGTGCAAAGGATGGAAATCAGTGTACTACAACCCATCAAGGAGAGCTTTCTTGGGTGTAGCTCCAACCAGCTTGCTTCAAGTACTTGTTCAGCATAAGAGATGGTCTGAAGGAGAGTGTCAAATTTTGCTTTCTAAGTACAGTCCTGCAAGGTATGCTTTTGGAAGGATCAATTTAGGCCTTCAAATGGGATATTGTGTTTATGGCTTATGGGCAACTAATTGTCTAGCAACACTAAATTACTCCATCATTCCTTCTCTCTGTCTCCTTAAAGGCATTCCCTTGTTTCCAAAGATGTCAAGTCCATGGTTCATACCTTTCGCTTATGTGATAGTTGGAGAAACTATTTATAGTTTGTTGGAGTTTTTGTTATGTGGAGGCACATTTCAAGGTTGGTGGAATGACCTAAGGATATGGTTATATAAGAGAACAAGCTCTTACCTACTTGCCTTCATTGACACTGTCTTGAAGCTTTTTGGGGTCTCAGATTCAACTTTTACTATCACAGCTAAGGTAGCAGAGGAAGATGTTTCCAAGCGCTATGAGAAAGAAGTTATGGAGTTTGGAACATCATCTCCAATGTTCACTATATTAGCAACACTTGCCATGCTCAATTTGTTTTGTTTTCTAAGTATGTTGAAGGATGTAGTCCTAAGGAAAGGTGGCCTTGAAGCTTATGAGAAAATGATGTTACAAATTCTGTTGTGTGGCTTTCTTGTTGTCATCAATTTGCCTCTCTACCAAGGTCTTTTCTTAAGGAAGGACAATGGCAGGTTGCCAACCTCTCTTGCCATCAAATCAACAACACTGGTTTTGGCTGTATTTATCTCCTTCAGCTTTGCATGA 2244 0.4158 MHHNWKHKKQVEAMDSGEYSPLFETRRGRGRLIYKLFAISLFVAICFIWVYRFSHMGEEGKWVWLGLLGAELWFGFYWVLTQALRWNTVFRKTFKNRLSQRYENKLPGVDIFVCTADPEIEPPKMVINTVLSVMAYDYPAEKMSVYLSDDAGSEITFYALLEAASFAKHWLPFCKRFKVEPRSPVAYFNSMVSSTCPGDTNLAKELAAVKVLYDEMERRIEDATKLNEVPKEARSKHRGFSQWDSYSSRRDHATILQIVLHKKDPNNSKDVEGFNLPTLVYLAREKRPQYPHNFKAGAMNSLLRVSSNISNGKIILNVDCDMYSNNSQSVRDALCFFMDEEKGHGIAYVQFPQIFENVTKNDLYGSALLAISEVEFHGADGYGGPLYIGTGCFHRRDTLCGLMFSDQYRNDWKSEDDKFIEASLQKLEESSKDLTSCTYEENTLWGKEMGLKYGCAVEDVITGLSIQCKGWKSVYYNPSRRAFLGVAPTSLLQVLVQHKRWSEGECQILLSKYSPARYAFGRINLGLQMGYCVYGLWATNCLATLNYSIIPSLCLLKGIPLFPKMSSPWFIPFAYVIVGETIYSLLEFLLCGGTFQGWWNDLRIWLYKRTSSYLLAFIDTVLKLFGVSDSTFTITAKVAEEDVSKRYEKEVMEFGTSSPMFTILATLAMLNLFCFLSMLKDVVLRKGGLEAYEKMMLQILLCGFLVVINLPLYQGLFLRKDNGRLPTSLAIKSTTLVLAVFISFSFA* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02561 747 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 21 735 - -
Rops11g02561 747 FunFam Cellulose synthase isolog 99 196 - -
Rops11g02561 747 FunFam Cellulose synthase-like protein E1 244 416 - -
Rops11g02561 747 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 99 185 IPR029044 -
Rops11g02561 747 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 244 416 IPR029044 -
Rops11g02561 747 Coils Coil 206 226 - -
Rops11g02561 747 SUPERFAMILY Nucleotide-diphospho-sugar transferases 109 483 IPR029044 -
Rops11g02561 747 Pfam Cellulose synthase 109 407 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops11g02561 747 Pfam Cellulose synthase 432 738 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02561 Rops-Chr11 43665780 43681612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02561 10 746 Glycosyltransferase AT1G55850 57.066 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02561 - - gmx:100815825 1217.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02561 11 43665780 43681612 Rops11g02561 11 43665780 43681612 ECH
Rops11g02561 11 43665780 43681612 Rops9g00198 9 2496065 2503287 PCT