Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01810 ATGATGTTGTCGAGGATGGAATCCAATAAGAAAAGTAGTGGGGGTTCTGGTAACCAGAAGAAGTTGTTAAAGGATGTTGAAACTATAAACAAAGCTATGTACTCGGAAAGAAGCTCTTCAAGGAATTCAATTTCTGTTGCAAATTCTAGATCCAAATCCAGTGGGAAATCCCTTTTACCTGATCCAAAATCAAGGCCTAAATCCAGTAATGATAATGATAATTTGCAAAAGGATAAGAAGTCCATATGGAATTGGAGGCCACTGAAAGCACTTTCCCATATCCGCAATAAGAGGTTCAATTGTAGTTTTTATCTCCATGTCCATTTGATTGAAGGGTTGCCTTCCAATTTTGAGGATTCTAGCCTCTCTGTGTATTGGAAGAGGCGCGACGGGGTTCTGGTGACTCGTCCGGCCAAGGTGATTCAGTGTGTGGCTGAATTTGAAGAGAAGTTGACTTACACTTGCTCAGTGTATGGCAGTAGGAGTGGACCTCACCATTCTGCAAAGTATGAAGCAAAGCATTTTTTGCTCTATGCTTCTCTTCTCAGTGCACCAGAACTTGATTTGGGGAAGCACCGGGTTGATCTCACGAGGTTGCTTCCTCTCACTCTGGAGGAGCTTGAGGAGGAGAAGAGCTCAGGGAAGTGGACTACTAGTTTTAGGTTATCAGGGATGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGGTATGTGGTGGTTGGTGATAATGCTAGCGCCACCAGAGACAGCCATAATGCTCCTAATGTATTGACTTCGAGGCAGAACAGTCTTGGTTTGATGAAGCCAGATGTTAAATCAAGACAGTTTGATGGAAGCAGCACCATGAGGAGTGCCGGAAGTTTGCAAAACTTTACCACTCAGTACTCATCTCGAGCTACAGATGAGGTAAAGGAACTTCATGAGGTATTGCCATCATCTAAGTCAGCACTGGCCAGCTCAATAGACATCTTATATAAGAAATTTGAAGAGGAAAAAGCATGTAGTCCTTTGTCCAATGAACCTGAACTTGATTCGTTCACAGAAAATCTTGAGCCAATCAAACCAGATGCCTATGCTTCATATGATCTTGGAAAAGAAAAGCTTGAAGAGCATGCAGGTAATGATGGAAATGCATGTCCAGTGCATGACAAGCCTGAAGTTAATGTATTTCAAGAAAACCTGGAGACAGTTAAACCAGATGACTATCCTTTACATGATTCTGGAAAAGAAAACCTTGAAGAGTGTCAAGGTAATGAATTTTATGTTGTTGATAAGGGCATAGAATTCCCACCAAATGAACCTGTTAAACCAGAGGAATCCACCATAAAGGCTCTTGAGGATCCTCCTACAGTTGATAGTACCTGTATCCTTGATACTACAGGTATACAAGTATCTTCTGAAGATAGCGTTAAACATGATTCCCAGGATGACGCGAATGATGGTTGTAAGGATCAGGCAGTGGCTGATGAATTTGCTTGCAAAGAGGAAGGCTTATACACGAATGAACTGCTCTTGCAAGAATTAGAATCAGCTTTAAATAGTGTCTCGGATTTGGAGAGGGTGGCTCTTGAATCTCCTAAAATTATGGAAGCCAAATCTGAATCTAAGATGAGAAAGTCACATAGCTTGGATGATGTTACAGAATCAGTTGCCAGTGAATTTTTAAGCATGCTAGGCATGGACCAAAGTCCGATGGGCTTGAGTTCTGAAAGCGAGCCTGAGTCTCCAAGAGAGCTTCTTTTAAGACAATTTGAGAAGGAGGCTCTGGATGGGGGCTTCTCTTTATTTGATTTTGACAGGGACTGTGATAATGAATCAGATGGTGGCGATGACGCTTCTACTGGATCTGAGCAGTGGAACTTCTCTGAGGGTATTAGGTCATCATCTTTGTTGCAACATCTGCAGAATGAGCGTCTAGTTGAGTCTCAGGACATGAGGAGCAAACAGAGGGTTCAGATGCTAGAAGACTTGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGAAGGCTTTTCATCATTCCCCACCAAAAGATTGTGCTGGTTTTGGAAGTCCAATTGATTTACCACTTGAAGAGCCTCCCACATTGCCTCCTCTTGCTGAGGGACTGAGCCCTTTTCTTCAGACCAAAGACGGGGGTTTTCTACGGTCTATGAATCCCTCACTTTTCAGGAATACTAAAAGTGGTGGGAGCTTAATCATGCAGGTTTCCAACCCGGTTGTGGTACCTGCAGAAATGGGTTCTGGGATCATGGAGGTTTTACAGTGTTTAGCTTCAGTGGGAATTGAAAAACTTTCAATGCAGGCAAAGGAGTTAATGCCTCTGGAGGATATCACAGGGAAGACAATGCAACAAATAGCATGGGAAGCTATGCCTGTCTTAGAAGGAACAGAGAGGCAATGTCATTTGCAGCATGATTTGATAACAGGGCAAGATGCTACTTGTGTGCAAAGGGACTTGAAAGGAACATCATCTGGAATAAAGTCTGGCAGGTTTAATTCAAGTTCAGTGGCCAATCAGACAGGGTCAGAGTTCGTTTCATTGGAAGATCTTGCTCCATTGGCTATGAATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATACAATCTGGGATGTCGGAGGAGGAGGCACCGTCAAACATTGTCGCACAATCCATTGGAGATATGTCAGCTCTTCAAGGCAAGGGGATTGATACCAGTGGGTCCCTTGGCCTGGAAGGAGCTGCTGGTTTGCAATTGTTGGATGTAAAAGACAGCAGTGATGGTGTTGATGGGATAATGAGCCTATCATTAACTCTTGATGAATGGATGAGGTTGGATTCTGGTGAGATTGATGATGTAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCAGCCCATCATGCTAACTCTTTTGACTTCATGCGTGGGATTTCAAAGGGAGATAGGAGAAAAGGCAAAGGCAGAAAATGTGGTTTGTTAGGAAACAATTTCACAGTAGCATTAATGGTGCAACTTCGTGATCCTCTTAGGAATTATGAGCCTGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGAGTTTGTCCTGCCAAAGCAAAAAATTTACAATAGTGTGTTTGAGGTAAGGAACAACGATAATGATGATGAAGAGAGTGAAATAGTTGCAAAGGTGGAAATAAAGGACACCAAGAAAGAGGAGATAAGTTTTGAAGAAGAGGGCATTGCTCAGTACAAAATTACTGAAGTCCATGTGGCAGGTCTCAAGAGTGAGCCTCACAAAAAGAAGCTTTGGGGCACTTCAAGCCAGCAACAATCTGGTTCCCGCTGGTTACTTGCAAATGGAATGGGAAAGAACAATAAGCTTTCATTAACAAAGTCAAAGGCTGCATCTAAATCTAGTGGTCCAGTTACCACAAAGGTGCAGCCTGGTGACACCTTGTGGAGCATTTCTTCGCGAATTTTTGGTACTGGAGCAAAATGGAAGACATTGCAAGCACTAAATCCGCATGTAAGAAACCCCAATGTCATTATACCAAGTGACACTATAAGACTTAGTTGA 3558 0.4266 MMLSRMESNKKSSGGSGNQKKLLKDVETINKAMYSERSSSRNSISVANSRSKSSGKSLLPDPKSRPKSSNDNDNLQKDKKSIWNWRPLKALSHIRNKRFNCSFYLHVHLIEGLPSNFEDSSLSVYWKRRDGVLVTRPAKVIQCVAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGMAKGAVMNVSFGYVVVGDNASATRDSHNAPNVLTSRQNSLGLMKPDVKSRQFDGSSTMRSAGSLQNFTTQYSSRATDEVKELHEVLPSSKSALASSIDILYKKFEEEKACSPLSNEPELDSFTENLEPIKPDAYASYDLGKEKLEEHAGNDGNACPVHDKPEVNVFQENLETVKPDDYPLHDSGKENLEECQGNEFYVVDKGIEFPPNEPVKPEESTIKALEDPPTVDSTCILDTTGIQVSSEDSVKHDSQDDANDGCKDQAVADEFACKEEGLYTNELLLQELESALNSVSDLERVALESPKIMEAKSESKMRKSHSLDDVTESVASEFLSMLGMDQSPMGLSSESEPESPRELLLRQFEKEALDGGFSLFDFDRDCDNESDGGDDASTGSEQWNFSEGIRSSSLLQHLQNERLVESQDMRSKQRVQMLEDLETEALMREWGLNEKAFHHSPPKDCAGFGSPIDLPLEEPPTLPPLAEGLSPFLQTKDGGFLRSMNPSLFRNTKSGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQIAWEAMPVLEGTERQCHLQHDLITGQDATCVQRDLKGTSSGIKSGRFNSSSVANQTGSEFVSLEDLAPLAMNKIEALSMEGLRIQSGMSEEEAPSNIVAQSIGDMSALQGKGIDTSGSLGLEGAAGLQLLDVKDSSDGVDGIMSLSLTLDEWMRLDSGEIDDVDNISEHTSKLLAAHHANSFDFMRGISKGDRRKGKGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVLPKQKIYNSVFEVRNNDNDDEESEIVAKVEIKDTKKEEISFEEEGIAQYKITEVHVAGLKSEPHKKKLWGTSSQQQSGSRWLLANGMGKNNKLSLTKSKAASKSSGPVTTKVQPGDTLWSISSRIFGTGAKWKTLQALNPHVRNPNVIIPSDTIRLS* 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01810 1185 SMART LysM_2 1137 1185 IPR018392 -
Rops11g01810 1185 Pfam LysM domain 1139 1184 IPR018392 -
Rops11g01810 1185 MobiDBLite consensus disorder prediction 1 76 - -
Rops11g01810 1185 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 96 239 IPR019448 -
Rops11g01810 1185 MobiDBLite consensus disorder prediction 1 19 - -
Rops11g01810 1185 Coils Coil 501 521 - -
Rops11g01810 1185 CDD LysM 1139 1184 IPR018392 -
Rops11g01810 1185 ProSiteProfiles LysM domain profile. 1136 1184 IPR018392 -
Rops11g01810 1185 ProSiteProfiles C2 NT-type domain profile. 91 239 IPR019448 -
Rops11g01810 1185 MobiDBLite consensus disorder prediction 32 58 - -
Rops11g01810 1185 SUPERFAMILY LysM domain 1136 1184 IPR036779 -
Rops11g01810 1185 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1178 IPR039614 -
Rops11g01810 1185 Gene3D LysM domain 1125 1185 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01810 Rops-Chr11 29107596 29112018 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01810 - - mtr:25486459 1748.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01810 11 29107596 29112018 Rops11g01810 11 29107596 29112018 ECH
Rops2g05163 2 92326749 92331241 Rops11g01810 11 29107596 29112018 PCT