Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01784 ATGGCGAGGCTTCTTCTTCGTAACGCCAACACTTTTCTCCACAAGCGCTCTTTCTTTTTCCACCCTGAACTTCATACGAGTTCTTTCTTTGAACAAGGAGTACTGGGCACGTCTCAAGTTTTGAGCTTTTCAACTCATAAAGGTAAAAGGCGCTCTAAATCAGATGGAAATGACTCAAGTGAAGAGAACATGTCTAAGAAAGATTTGGCCCTACGACAAGCCATGGATCAGATCACTTCTGCATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTCTCACCCAAAAATGTACCTGTGGTGTCAACTGGTTCTTTTGCCCTTGATATAGCACTAGGAATTGGTGGTTTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTTCAGAGGCACAGAAGTTAGGAGGCTACTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCTATTGGGGTAAATACTGAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGAAGGTGAGATGGGTGATGCTCATATGGCAATGCAAGCTAGGTTGATGAGCCAAGCACTTCGGAAATTGTGCCACTCCTTGTCACTTTCACAATGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCAACAGAAGTTACTTGTGGTGGAAATGCACTGAAATTCTACTCTTCTGTGCGACTAAATATCAAAAGAGTAGGGCTTGTGAAGAAGGGTGAAGAGACTTTAGGAAGCCAGGTTCTTGTCAAGATTGTGAAGAACAAACTTGCCCCTCCATTTAAAACTGCACAGTTTGAACTTCAGTTTGGCAAGGGTATATGTAAAGAAGCAGAGATTATAGAGTTGAGCCTAAAATACAAACTCATCAAAAAGAGTGGTGCATTTTATGAATATAATGGCCGGAATTTCCACGGTAAGGATGCTTTAAAGAGGTTCCTGGCTGAGGGTGATGTTGCACAAGAATTAACAACAAAGCTCAGGGAGAAGCTTCTTAATGATGAGGCAGAAATAGCACCAGAGGGTCAGGTGATTGGAGATGTTACAGAAGAAATGGTATTACCTGATTCTACTGATGAAGGAGCAGCTGCTGCTGTAGAAGCATGA 1284 0.4283 MARLLLRNANTFLHKRSFFFHPELHTSSFFEQGVLGTSQVLSFSTHKGKRRSKSDGNDSSEENMSKKDLALRQAMDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGFPKGRVVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGLVKKGEETLGSQVLVKIVKNKLAPPFKTAQFELQFGKGICKEAEIIELSLKYKLIKKSGAFYEYNGRNFHGKDALKRFLAEGDVAQELTTKLREKLLNDEAEIAPEGQVIGDVTEEMVLPDSTDEGAAAAVEA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01784 427 CDD RecA 98 335 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 SMART AAA_5 120 294 IPR003593 GO:0016887
Rops11g01784 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 333 IPR027417 -
Rops11g01784 427 PANTHER RECA 44 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 Gene3D - 97 395 IPR027417 -
Rops11g01784 427 SUPERFAMILY RecA protein, C-terminal domain 335 389 IPR023400 -
Rops11g01784 427 ProSitePatterns recA signature. 279 287 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Rops11g01784 427 FunFam Recombinase RecA 96 394 - -
Rops11g01784 427 ProSiteProfiles RecA family profile 1. 98 257 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Rops11g01784 427 Hamap Protein RecA [recA]. 67 393 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 MobiDBLite consensus disorder prediction 45 65 - -
Rops11g01784 427 MobiDBLite consensus disorder prediction 48 65 - -
Rops11g01784 427 Pfam recA bacterial DNA recombination protein 70 333 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 PRINTS RecA protein signature 228 257 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 PRINTS RecA protein signature 309 338 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 PRINTS RecA protein signature 276 304 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 PRINTS RecA protein signature 190 219 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 PRINTS RecA protein signature 156 185 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 NCBIfam recombinase RecA 67 388 IPR013765 GO:0003697|GO:0005524|GO:0006281
Rops11g01784 427 ProSiteProfiles RecA family profile 2. 267 338 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01784 Rops-Chr11 28681750 28687767 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01784 K03553 - gmx:100798983 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01784 11 28681750 28687767 Rops11g01784 11 28681750 28687767 ECH
Rops2g05187 2 92618069 92625002 Rops11g01784 11 28681750 28687767 PCT