Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01739 ATGCGCTCAGGAGCTTGTACATTGCAGCAGACCCTCACAGCGGAGGCTGCTTCAGTTTTGAAGCACTCTCTGGGCTTAGCAAGAAGGAGGGGCCATGCACAGGTCACACCTTTGCATGTAGCTGCCACCTTGCTAAGTTTAAGAGGCAGTTCTTTGAGAAGGGCTTGTCTCAAATCACAGCCACATCAAACTTCACATCCTCTTCAATGCAGAGCTCTTGAGCTTTGTTTCAATGTGGCTCTCAATAGGCTCCCAACAACACCTGGTCCTTTGCTTCATACTCAGCCTTCACTTTCCAATGCTCTCATTGCTGCACTCAAGAGAGCACAGGCACATCAGAGAAGGGGATGCATTGAACAACAACAACAACAGCCACTTCTCACTGTAAAGGTGGAGTTGGAACAGCTCATCATATCTATTCTTGATGACCCTAGTGTTAGTAGGGTTATGAGAGAGGCTGGGTTCTCTAGCCCTGCTGTTAAGAACAACATAGAGGACACTTCAGCACCTTCTTCTGTTTTTCAGTGTTACAATAATTCTGGTGGTGTTTTCTCTTCTCCTTGTTCACCTTCTCCTAGTGAGAACCATAGAGAAAACATTAACCCAAGTAGCACCTTCAGGCAGAACCACTTCCTGGCTGCTTACACTTCTGAGTATGGCCCACTTCTCTTTTCTCCTCAGAAGAAAGCCTCGGTGTATCCCATCACTGAGTCACCACCCTCTTCCAAGGAAGATATCAAGCTTGTTCTGGATATCCTCTTGAGGAAGAAGAAAAAGAACACTGTGATAGTTGGTGACTCAGTGTCATTAACTGAAGGCCTTGTGGGAGAGTTAATGGGAAGGTTAGAAAGAGGTGAGGTTCCTGATGAGTTGAAGTCGACTCATTTCATCAAGTTTCAGCTTGCACCAGTCTCTTTGAGGTTCATGAAAAGGGACGAAGTGGAAATGAACCTCTCAGCACTGAAAAGGAAGGTGGATTCTATTGCATCAGGAGGAGGAGGAGGAGGAGCCATTTTCTATGTTGGAGACCTGAAGTGGACAGTGGAGGCATCAACTTTCAGTGAAAAAGAAGTTGGAGAAGTTTCAGGTTATAACCCAGTTGATCATCTAGTTTCAGAAATAGCAAAGTTGTTTTCTGACCAAGGAAACTCCAACAACACTAAGGTGTGGCTTGTGGCCACAGCAAGTTATCAAACTTACATGAGATGTCAAATGAGGCAACCTCCTCTTGAGACTCAGTGGGCACTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGGTTTGAGTCTTCATGCTTCCAGTGTCCATGATTCAAAGATGACCATCTCCCAGAGTCCATCTCATATGCTGGAAACAAAGCTCTTCATTAACAAGGAGGAGCAAGATAAGCTTAACTGTTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCTCAATTGTTCAAACCAGGCCAGAAGAAACTGTTACCTTCCTGGCTTCAGTCTCATAGCACTGAAGCCCATCAAAAGGATGAATTAACCCAGTTGAAGAAAAAATGGAACAGACTATGCCATTGTCTTCACCAGAACAAACAGCCTCAGAACCATTGGAACAAAAGTTTATATGGCAATCACAGTTCAAATGCAAAGATCTACCCTTATAATTCATCATACCCCTGGTGGCCAAACCAAGGTAGTGTGTTTCCAGATTCAAGTTCTATATCTTTTGCTGATTCTGCTGCTGCTAAACCAGCTTATAGCTCCAACACTGTACCACGATTCCGGCGTCAACAATCATGCACCATTGAGTTCAATTTCAATGATGTAACTCAGAACAAGCAATCAACAGAGACAACAACCTTGGATTCTCTTAAGGGTATGGAAGGTAAAGAAGTAAAGATAACTCTTGCTCTAGGAAATTCAACATTCGGTGGTTCAGGGCAAACGGTGGAAAATATAACTGATAGAACACTGCGAAGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAATATGAAACTGTTGCTTCAATAGCAGAGGCCTTGATTGATTCCAAATCAGAAAAGCAAGGTGCTACTTTGTTGTTTATGCAGGGCAATGATTCTATTGGGAAAGCAAGGTTGGCACGTGCCATTGCAGAATCAGTTTTTGGCTCAGTTGATGTGCTCCTTCACTATGACATGCTGAAAAAGGAGAATTCAGCAACCCCATTTTCTGAAATGCTAGCTGGAGCATTGAAAACCCATGAAAAGCTTGTTTTTTTTATAGAAAATGTTGATTTTGCTGATGCCCAGTTCAAGAAATTCCTAGCAGATGGATTTGAAACAGCAAAGTTTGTAAATTTAGGCCAAACAATATTCATATTGACTAATGGTGGCACCAGAATCAATGAAGATCAGAACAAGGACTCAGTGGTCAAGTTGATGTTGCAGATCAGTGAAACCAAGCCTACCCTTGAGTCTTCATCTCCTTGTTTCGGAAACAAGAGAAGGGCTGAATTGGATTTGTTTACCAAGATCAAGAATCCAAGGATTGAAAAGAAGGAAGAGGGTGTGTTTGTTTCAGAAGAAAGGAACAAAAAGAGAGATTTTTCAAGACAATCAAGCTTTAACACTCTTGATCTGAACATGAAAGCTGATGAAGAAGATAATGGGGAAGACAAAACAGGGAAAATAGCCCAATTTCAAGTGATTTGA 2685 0.4261 MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTVKVELEQLIISILDDPSVSRVMREAGFSSPAVKNNIEDTSAPSSVFQCYNNSGGVFSSPCSPSPSENHRENINPSSTFRQNHFLAAYTSEYGPLLFSPQKKASVYPITESPPSSKEDIKLVLDILLRKKKKNTVIVGDSVSLTEGLVGELMGRLERGEVPDELKSTHFIKFQLAPVSLRFMKRDEVEMNLSALKRKVDSIASGGGGGGAIFYVGDLKWTVEASTFSEKEVGEVSGYNPVDHLVSEIAKLFSDQGNSNNTKVWLVATASYQTYMRCQMRQPPLETQWALQAVPVPSGGLGLSLHASSVHDSKMTISQSPSHMLETKLFINKEEQDKLNCCEECASNYEKEAQLFKPGQKKLLPSWLQSHSTEAHQKDELTQLKKKWNRLCHCLHQNKQPQNHWNKSLYGNHSSNAKIYPYNSSYPWWPNQGSVFPDSSSISFADSAAAKPAYSSNTVPRFRRQQSCTIEFNFNDVTQNKQSTETTTLDSLKGMEGKEVKITLALGNSTFGGSGQTVENITDRTLRRAHICKLLQENVPWQYETVASIAEALIDSKSEKQGATLLFMQGNDSIGKARLARAIAESVFGSVDVLLHYDMLKKENSATPFSEMLAGALKTHEKLVFFIENVDFADAQFKKFLADGFETAKFVNLGQTIFILTNGGTRINEDQNKDSVVKLMLQISETKPTLESSSPCFGNKRRAELDLFTKIKNPRIEKKEEGVFVSEERNKKRDFSRQSSFNTLDLNMKADEEDNGEDKTGKIAQFQVI* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01739 894 Gene3D - 236 423 IPR027417 -
Rops11g01739 894 Coils Coil 457 477 - -
Rops11g01739 894 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Rops11g01739 894 Gene3D - 9 169 IPR036628 -
Rops11g01739 894 MobiDBLite consensus disorder prediction 872 894 - -
Rops11g01739 894 FunFam protein SUPPRESSOR OF MAX2 1 9 170 - -
Rops11g01739 894 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Rops11g01739 894 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Rops11g01739 894 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Rops11g01739 894 Gene3D - 639 831 IPR027417 -
Rops11g01739 894 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01739 Rops-Chr11 27597628 27601713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01739 - - gmx:102660146 1326.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01739 11 27597628 27601713 Rops11g01739 11 27597628 27601713 ECH
Rops2g05231 2 93380070 93383952 Rops11g01739 11 27597628 27601713 PCT