Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01192 ATGGTGCTGTGCTTAGACGGATTAAAGCAGTTGTATGCTGCTGTGGTAAATTGTTGGGATGCCAGTTCACCGAAGTCACCTAGTGGTTTACAAAATCCAGAAGCACTTGCAAGAGAAACAGTGTTTACTGTAAGTGAGATTGAAGCGCTGTATGAACTATTCAAGAAGATCAGCAGTACAGTGACTGACGATGGGCTACTCACTAAGGAAAAATTTCAGCTGGCCTTATTCAAGACAAGCAAGAAAGAGAGTTTATTTGCAGATAGGGTGTTTGACTTGTTTGACAAAAAGCACCATGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTCCATCCTAATGCATCAATTGAAGATAAGATTGACTTTTCATTCCAATTGTATGATCTGAAACAGCAAGGATTTATTGAGAGAGAGGAGCTAAGACAAATGGTGGTGGCCACTCTAGCTGAATCAGGCATGAAACTTTCAGATGATGTGGTTGAAAGCATCATTGACAAGACATTTGAGGAAGTTGACACAAAGCATGATGGGAAGATTGACAAGGAAGAATGGCATAGCCTTGTCTTGCAGCATCCATCCCTTCTGAGAAATATGACTCTTCAGTATCTTAAAGATATCACAACTACATTTCCCAGTTTTGTATTTCACTCACAAGTTGATGATACTTGA 681 0.3979 MVLCLDGLKQLYAAVVNCWDASSPKSPSGLQNPEALARETVFTVSEIEALYELFKKISSTVTDDGLLTKEKFQLALFKTSKKESLFADRVFDLFDKKHHGILDFKEFALALSVFHPNASIEDKIDFSFQLYDLKQQGFIEREELRQMVVATLAESGMKLSDDVVESIIDKTFEEVDTKHDGKIDKEEWHSLVLQHPSLLRNMTLQYLKDITTTFPSFVFHSQVDDT* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01192 226 ProSiteProfiles EF-hand calcium-binding domain profile. 163 198 IPR002048 GO:0005509
Rops11g01192 226 SMART efh_1 167 195 IPR002048 GO:0005509
Rops11g01192 226 SMART efh_1 86 114 IPR002048 GO:0005509
Rops11g01192 226 SMART efh_1 123 151 IPR002048 GO:0005509
Rops11g01192 226 Gene3D - 32 226 - -
Rops11g01192 226 PRINTS Recoverin family signature 42 61 - -
Rops11g01192 226 PRINTS Recoverin family signature 90 111 - -
Rops11g01192 226 PRINTS Recoverin family signature 137 155 - -
Rops11g01192 226 PRINTS Recoverin family signature 183 203 - -
Rops11g01192 226 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Rops11g01192 226 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Rops11g01192 226 CDD EFh 123 192 IPR002048 GO:0005509
Rops11g01192 226 Pfam EF-hand domain pair 64 107 IPR002048 GO:0005509
Rops11g01192 226 PANTHER CALCINEURIN B 26 225 IPR045198 GO:0005509|GO:0019722|GO:0019900
Rops11g01192 226 Pfam EF-hand domain pair 122 187 IPR002048 GO:0005509
Rops11g01192 226 SUPERFAMILY EF-hand 33 218 IPR011992 -
Rops11g01192 226 FunFam calcineurin B-like protein 3 32 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01192 Rops-Chr11 17464088 17471179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01192 1 226 EF-hand Containing Proteins AT5G55990 77.876 2.18e-128 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01192 K06268 - gmx:100800868 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01192 11 17464088 17471179 Rops11g01192 11 17464088 17471179 ECH
Rops2g04605 2 83983849 83989496 Rops11g01192 11 17464088 17471179 PCT