Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01987 ATGTTTAGACATGATGAGACAGATGTAAGCAATTTCTTTCGTTCTGATAAAAATTCGAAATCGCTTCTGAATTCTGATTCCCAATTCTTCTTCTATTGTCACCGATTGAAAGTAAAGGATTTGATTCAGTGGAGACGGAGAGACATGGCTAACAGTGCAACTGCATGTGCTGAGAGAGCAACGAGTGACATGCTTATTGGTCCTGACTGGGCAATCAACATAGAGTTGTGTGATATCATTAATATGGACCCTAGGCAAGCAAAGGATGCATTAAAGATACTCAAGAAGCGCCTGGGCAGTAAAAATCCCAAAACACAGCTGCTGGCTCTTTTTGTACTGGAGACCCTTAGTAAAAATTGTGGTGAAAGTGTATTTCAGCAGATCATTGAGCGAGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCGGACTTAAGCGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGAGGCCCAACTGGAGTTTATCCTCAATACTATGCAGCATATAATGAATTAAAGTCTGCTGGAGTTGAATTTCCACCACGGGGAGAAAATAGCGTGCCATTATTCACACCTCCTCAAACTCAGCCAATTCTTCCTTCTGCTGCAGAATATGATGATGCTGCTATTCAGGCTTCACTTCAGTCAGATGCATCTGGCCTTAGTTTACCAGAGATTCAAAATGCTCAAGGAATAGCTGATGTATTGATGGAAATGCTTAATGCCTTGAATCCGAATGACCGTGAGGGTGTGAAGGGGGAAGTAATTGTTGACCTTGTTGACCAATGCTGTTCTTACCAAAAGCGTGTCATGCATCTTGTGAACAATACTGCGGATGAGGAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTTAGTCGACATGATGATATTGTGAAAGGAACTGCTGATTCAGGTGCAAGAGAAGCAGAAAATTCAGTTTTGCCACTTGTAAATGTAAACCATGAAGATGACGAGTCAGAAGATGATTTTGCTCAACTGGCCCATAGGTCATCCCGAGATGCTTATATACAGAATCGCAAACCAGCCTATGACAAGGCAGAACCAGGGAAGATAAGCTCACTTATTCCCCCACCACCAGCATCAAGGAAGCCAGTCTACTCTGGCACTGGCATGGTTGACTATCTTAGTGGTGAAGCGTATAAGGCAGAAGGATCCCCTGAAAACTCAGAACCAACTCCATATGCAGTTCCCCTTCATTCTAGCCCTAATCCTGCCTCATCAACTATTCCAACACTGTCTTCACCCCACTCTCATGCCATGAATACCTCATCACCAATTTTTAGCAGACAGCCTGTGTATGATGAACCACCTCCTATGAACAAATCTTCAGAACAGCTCCCTCCAGCTCCCTGGGACACTCAATCTCCGAGCTTCCTTCCACCCCCACCTTCAAAGCATAATCAGAGACAACATTTTTTTGAGCAACATGGCGCATCTCATTCAAGTAATGAATCCAGTTCCTCTTATGACAGCTTGGTGGGACAAACTCAAAATCTCTCCCTGAATTCATCCACCCCAACCAAACAGCAGAAGCCAGAAGATGCCCTTTTTAAAGATCTAGTTGATTTTGCAAAATCCAAAACCTCTTCATCTTCCAAACCCAATAGGTCATATTGA 1683 0.4296 MFRHDETDVSNFFRSDKNSKSLLNSDSQFFFYCHRLKVKDLIQWRRRDMANSATACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKILKKRLGSKNPKTQLLALFVLETLSKNCGESVFQQIIERDILHEMVKIVKKKPDLSVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSAGVEFPPRGENSVPLFTPPQTQPILPSAAEYDDAAIQASLQSDASGLSLPEIQNAQGIADVLMEMLNALNPNDREGVKGEVIVDLVDQCCSYQKRVMHLVNNTADEELLGQGLALNDSLQRVLSRHDDIVKGTADSGAREAENSVLPLVNVNHEDDESEDDFAQLAHRSSRDAYIQNRKPAYDKAEPGKISSLIPPPPASRKPVYSGTGMVDYLSGEAYKAEGSPENSEPTPYAVPLHSSPNPASSTIPTLSSPHSHAMNTSSPIFSRQPVYDEPPPMNKSSEQLPPAPWDTQSPSFLPPPPSKHNQRQHFFEQHGASHSSNESSSSYDSLVGQTQNLSLNSSTPTKQQKPEDALFKDLVDFAKSKTSSSSKPNRSY* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01987 560 ProSiteProfiles GAT domain profile. 226 314 IPR004152 GO:0035091|GO:0043130
Rops10g01987 560 SMART VHS_2 53 185 IPR002014 GO:0035091|GO:0043130
Rops10g01987 560 SUPERFAMILY ENTH/VHS domain 46 190 IPR008942 -
Rops10g01987 560 SUPERFAMILY GAT-like domain 194 315 - -
Rops10g01987 560 FunFam TOM1-like protein 2 52 199 - -
Rops10g01987 560 Pfam VHS domain 53 182 IPR002014 GO:0035091|GO:0043130
Rops10g01987 560 MobiDBLite consensus disorder prediction 352 368 - -
Rops10g01987 560 PANTHER TOM1-LIKE PROTEIN 50 556 IPR044836 GO:0035091|GO:0043130|GO:0043328
Rops10g01987 560 PIRSF TOM1 44 559 IPR014645 -
Rops10g01987 560 MobiDBLite consensus disorder prediction 496 533 - -
Rops10g01987 560 CDD GAT_GGA-like_plant 234 312 - -
Rops10g01987 560 Gene3D - 223 321 IPR038425 -
Rops10g01987 560 Pfam GAT domain 240 315 IPR004152 GO:0035091|GO:0043130
Rops10g01987 560 MobiDBLite consensus disorder prediction 403 538 - -
Rops10g01987 560 CDD VHS 53 183 - -
Rops10g01987 560 Gene3D - 45 206 IPR008942 -
Rops10g01987 560 ProSiteProfiles VHS domain profile. 60 189 IPR002014 GO:0035091|GO:0043130
Rops10g01987 560 MobiDBLite consensus disorder prediction 352 389 - -
Rops10g01987 560 MobiDBLite consensus disorder prediction 416 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01987 Rops-Chr10 36277848 36287711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01987 - - gmx:100792343 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01712 9 30052993 30061062 Rops10g01987 10 36277848 36287711 PCT