Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01406 ATGTCTAAAGTTTTCAGCTTTACCGGTTGTGATGATTTTTGCCCTGGGGGGTCAATATACCCTAATCCCAAGGAAGCGAATCTCTTCTTGTCTCTTGGCCGTCAAGTTGATGCTTACTTTCCTCTTCAGAAGAGATCTCGTGTCAGTGTTCCATTCGATTTCAGTGGAGAGTGGTTTGAGCAGAAGCAGAAGACATCTATTGAAACTTTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGCTGCCTGCAGGCCAAGATAGGAGTGTATGCGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTGAGCAATATTTGTAAGGATGAAATCTGCAGCAAAGGATGCACCAGAAATGAAAATGAGTCAAGTGAGGAGGAGGATGATGATCAGGGATTTGAAGATGAAGGATACCTCTCTCGAAGCTTGGAGGGAAAAAAGGCAACCGATGTTAGACTTGCTGCAATTGCTGTTGGGACAGCATCTCGGGGAGGGTTGGGGAAGCTTTCAATTCGTGGATGCAATTCAGATCGTGGGGTGACTGATGTAGGTCTCAAAGCCATTGCTCATGGATGTCCTTCTCTAAAGGTTTTCACTCTGTGGGATGTTGCTACCATTAGTGATGAAGGCCTGATGGAGATTGCTAATGGGTGTCACCAGTTAGAGAGGCTTGACCTTTGCAACTGCCCCACAATTTCTGACCAGGCTTTAATTGCTGTTGCAAAGAATTGCCCAAATCTGACTGAGTTATCAATAGAGTCATGTCCTAACATTGGTAATGAAGGTCTACAAGCTACTGGGAAGGGGTGCCCCAATCTAAGATCTATTTCAATTAAGGATTGCTCCAGAGTTGGTGATCAGGGAATTGCTGGCCTGTTATCTTCAACTTCTTTTATTCTATCAAAGGTGAAGCTTGAGTCGCTGGTTGTTTCCGATCTCTCTCTGGCAGTTATCGGACATTATGGCTTTGCGGTTACCGATCTTGTCCTAAATTGCCTCCCAAATGTCACTGAGAAGGGGTTTTGGGTTATGGGTAATGGTTGTGGACTGCATAAACTAACGTCACTCACAATTGGGAACTGCAGAGGAGTAACAGATGTTGGGCTTGAGGCTATTGGAAAGGGTTGTCCAAATGTGAAAAACTTCCAGCTTCAAAAATGTGCAATTCTGTCAGACAATGGGTTGGTATCATTCACCAAGGCTGCTCCATCAATTCAGAGCCTACAATTGGAAGAGTGCCACAGAATTACCCAATTTGGGCTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTCTTACTCTAGTAAGCTGCTATGGGATCAAAGTTATGAACTTGGAATTGCCAGCAGTATCTCCTTGTGAATCAATTTGCTCAATATCAATCCATGATTGCCCTGGATTTGGTGATGCTACCCTTGCTGTGCTGGGAAAGCTGTGCCCTCGGCTTCAGTATGTTGAATTTAGTGGACTTGAGGGAATAACAGACACTGGTATTCTTTCACTGCTTGAGAGCTCTGAGGCTGGTTGGTTTAAAGTTAATCTAAGTGGTTGCATTAATCTGACAGACAGATCAGTTTTGTCCATGGTCAAGTCACATGGATGGACTCTTGAGGTTCTAAATCTTAAGGGTTGTAGAAGAATTGGTGATGCTAGCTTGAAGGCAATTGCAGTCAATTGCCCTTTGCTCAGTGATCTTGATGTTTCCAAGTGTGCAATCACTGATACTGGGATTGGGGCCCTTGCACGTGGAAAACAGCTCAAATTGGAGATCCTTTCTTTAGCAGGTTGCACATTGGTTTCAGACAAGAGTGTGCCCTCTTTGAAAAAATTGGGTCATGGCCTTGAGGGATTGAATATCCAGAATTGCAATGCAATCAGCACCCGCTCAGTTGACAGGCTTCAGGAGCATCTCTGGATATGTGACATCCTCTCCTGA 1941 0.4446 MSKVFSFTGCDDFCPGGSIYPNPKEANLFLSLGRQVDAYFPLQKRSRVSVPFDFSGEWFEQKQKTSIETLPDECLFEILRRLPAGQDRSVCASVSKRWLMLLSNICKDEICSKGCTRNENESSEEEDDDQGFEDEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGCNSDRGVTDVGLKAIAHGCPSLKVFTLWDVATISDEGLMEIANGCHQLERLDLCNCPTISDQALIAVAKNCPNLTELSIESCPNIGNEGLQATGKGCPNLRSISIKDCSRVGDQGIAGLLSSTSFILSKVKLESLVVSDLSLAVIGHYGFAVTDLVLNCLPNVTEKGFWVMGNGCGLHKLTSLTIGNCRGVTDVGLEAIGKGCPNVKNFQLQKCAILSDNGLVSFTKAAPSIQSLQLEECHRITQFGLFGVLFNCGAKLKALTLVSCYGIKVMNLELPAVSPCESICSISIHDCPGFGDATLAVLGKLCPRLQYVEFSGLEGITDTGILSLLESSEAGWFKVNLSGCINLTDRSVLSMVKSHGWTLEVLNLKGCRRIGDASLKAIAVNCPLLSDLDVSKCAITDTGIGALARGKQLKLEILSLAGCTLVSDKSVPSLKKLGHGLEGLNIQNCNAISTRSVDRLQEHLWICDILS* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01406 646 PANTHER UNCHARACTERIZED 455 631 - -
Rops10g01406 646 FunFam EIN3-binding F-box protein 1 137 255 - -
Rops10g01406 646 FunFam EIN3-binding F-box protein 1 256 446 - -
Rops10g01406 646 SMART LRR_CC_2 375 400 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 513 533 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 243 268 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 162 190 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 561 585 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 613 638 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 269 294 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 191 216 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 481 506 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 217 242 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 401 426 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 349 374 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 535 560 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 587 612 IPR006553 -
Rops10g01406 646 SMART LRR_CC_2 455 480 IPR006553 -
Rops10g01406 646 Gene3D Ribonuclease Inhibitor 138 240 IPR032675 -
Rops10g01406 646 SMART fbox_2 70 111 IPR001810 GO:0005515
Rops10g01406 646 MobiDBLite consensus disorder prediction 115 135 - -
Rops10g01406 646 Gene3D Ribonuclease Inhibitor 449 646 IPR032675 -
Rops10g01406 646 SUPERFAMILY RNI-like 345 608 - -
Rops10g01406 646 FunFam EIN3-binding F-box protein 1 507 644 - -
Rops10g01406 646 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Rops10g01406 646 SUPERFAMILY RNI-like 167 386 - -
Rops10g01406 646 FunFam EIN3-binding F-box protein 1 60 109 - -
Rops10g01406 646 Pfam F-box domain 70 106 IPR001810 GO:0005515
Rops10g01406 646 Gene3D Ribonuclease Inhibitor 241 448 IPR032675 -
Rops10g01406 646 Gene3D - 60 111 - -
Rops10g01406 646 Pfam Leucine Rich repeat 537 558 IPR001611 GO:0005515
Rops10g01406 646 Pfam Leucine Rich repeat 561 583 IPR001611 GO:0005515
Rops10g01406 646 Pfam Leucine Rich repeat 242 264 IPR001611 GO:0005515
Rops10g01406 646 Pfam Leucine Rich repeat 350 371 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01406 Rops-Chr10 27072376 27075904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01406 K14515 - gmx:100805418 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01406 10 27072376 27075904 Rops10g01406 10 27072376 27075904 ECH
Rops9g01907 9 34732549 34736237 Rops10g01406 10 27072376 27075904 PCT