Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01227 ATGGAACGTGCTGGGAGGCTCGCGAGTAGGGAGATTCTGAAGCGACTGGTTTGTGAGTCGAAGCAGAAGGGTTCCCTGCTGAACCATTCCAGATGCTTGTCCTCTGTTTCTCGCTCTGTTTTGAGAAACAGGGGATCCGAAACAGAGAACTTGTTGACCAAAAACCTCTCACGCAGTGTTATGTCTCGATCTATTTCATTGGAGGCACTCAAACCCAGTGACACTTTCCCTCGACGCCACAACTCTGCCACCCCTGAAGAACAGAGCAAGATGGCTCAGACTTGTGGCTTCGACAATCTGGATTCTTTGATTGATGCCACCGTGCCTAAATCGATCCGTTTGAAGGAGATGGAGTTCAGCATGTTCAATGAAGGGTTAACAGAGGGTAAAATGATAGAGCACATGAAGCACTTGGCTTCTAAGAACAAGTGTTTCAAGTCATACATTGGAATGGGGTACTACAACACACGTGTTCCACCTGTGATATTGAGGAACATCATGGAAAACCCTGCTTGGTACACACAGTACACTCCTTACCAAGCTGAGATATCTCAAGGGCGTCTTGAATCCTTGATGAATTTCCAAACCATGATCACTGATCTCACTGCTCTACCCATGTCTAATGCTTCATTGCTTGATGAAGGAACTGCTGCTGCTGAAGCAATGTCTATGTGTAATAATATTCACAAGGGAAAGAGAAAAACTTTTGTCATTGCCAATAACTGTCACCCTCAAACCATTGATGTTTGCAAGACCAGAGCTGCTGGTTTTGACCTTAAGGTTGTTACTGTGGATCTTGAGGATATTGATTACAAATCGGGTGATGTCTGTGGTGTTCTTGTTCAGTATCCGGGTACTGAGGGTGAGGTTTTGGATTATGGGGAGTTTGTTAAGAAAGCTCATGCTCATGGAGTCAAGGTTGTGATGGCAACTGATCTATTGGCTTTGACTGTGTTGAAGCCTCCTGGTGAACTTGGGGTAGATATAGTTGTTGGCTCAGCTCAGAGGTTTGGGGTTCCAATGGGTTATGGTGGTCCTCATGCTGCGTTCTTGGCCACATCACAAGAGTACAAGAGGATGATGCCAGGAAGAATCATCGGTGTTAGTGTTGATTCTTCTGGAAAGCCAGCCTTGAGGATGGCCATGCAAACTAGGGAGCAGCATATTCGTCGGGATAAGGCTACAAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCTACGTATGCTGTATATCATGGACCTGAAGGCCTTAAAACCATTGGACAACGGGTTCATGGTCTGGCTGGGGTGTTTGCCCTAGGATTAAAGAAACTTGGAACAGTGGAAGTTCAGGATCTTCCCTTTTTTGACACTGTGAAGATTAAGACTTCCAGTGCCCATGCAATTGCTGATGCTGCTAACCAAAGTGAAATAAATTTGCGAGTTATTGATGGGAACACTATCACTGTTGCTTTTGATGAAACAACCACCTTGGAGGATGTGGATAAGCTTTTCAAAGTTTTTGGTAACGGCAAACCTGTCTCCTTCACAGCTGCATCTCTTGCACCAGAAGCTCAGACTGCAATTCCTTCTGGACTAATTAGGAAGAGTCCTTATCTGACACACCCTATCTTTAACACGTACCACACCGAGCATGAGTTGCTCAGGTACATTCATAGGCTACAAGCAAAAGATCTCTCCCTGTGCCACAGTATGATCCCACTGGGATCTTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCTAGCTTTTCTGAAATTCACCCTTTTGCACCAGTTGAACAGGCTCAAGGTTATCAGGAAATGTTTGAAAATTTGGGTAACCTGTTGTGTACCATCACCGGGTTTGATTCCTTCTCTTTGCAACCTAATGCTGGTGCTGCTGGAGAATATGCTGGACTGATGGTTATTCGTGCATATCATTTGGCAAGAGGAGACCACCACCGCAATGTTTGTATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGGATGAAAATTGTACCTGTTGGAACTGATGCCAAGGGAAATATTAATATTGAAGAGTTGAGGAAGGCTGCTGAAACACACAAGGACAACTTATCTGCCCTTATGGTAACATATCCTTCAACCCATGGTGTTTACGAAGAGGGTATCGATGAGATATGCAAGATTATTCATGATAACGGAGGCCAAGTATATATGGATGGTGCTAACATGAATGCACAGGTGGGACTTACAAACCCAGGTTGGATTGGAGCAGATGTTTGCCATCTGAATCTCCATAAGACATTTTGCATCCCTCATGGAGGTGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGTGGTTCCCACTGGTGGCATTCCTGCCCCTGACAAGTTGCAGCCACTTGGTACCATTTCTGCTGCACCATGGGGCTCAGCACTGATATTACCAATCTCATACACTTACATAGCCATGATGGGTTCTAAAGGACTCACCGAAGCATCAAAGATAGCCATTTTGAATGCAAATTATATGGCAAAACGATTGGAGAATTATTACCCCGTTCTTTTCTGTGGAGTCAATGGAACAGTTGCTCATGAATTCATTATTGACTTAAGAAGCTTTAAGAACACTGCGGGGATAGAGCCTGAAGATGTTGCAAAGCGCCTTATGGACTATGGATTTCATGGACCAACAATGTCATTTCCTGTGCCTGGCACACTCATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGCGATGCTCTTATCTCCATTCGAGAAGAAATTGCTGAGATTGAGAAAGGAAAGGCTGACATTAACAACAATGTACTTAAGGGAGCTCCTCACCCACTATCAGTGCTCATGGGAGATGCATGGACAAAACCATACTCCAGGGAATATGCAGCCTTCCCAGCTTCCTGGCTCCGTTCATCTAAGTTCTGGCCTTCCACAGGACGTATTGATAATGTGTATGGTGACCGCAACCTGGTTTGCACCCTTCTCCCAGCATCACAGGTTGGTGAAGAACAAGCTGCTGCCACAGCATAA 3111 0.4516 MERAGRLASREILKRLVCESKQKGSLLNHSRCLSSVSRSVLRNRGSETENLLTKNLSRSVMSRSISLEALKPSDTFPRRHNSATPEEQSKMAQTCGFDNLDSLIDATVPKSIRLKEMEFSMFNEGLTEGKMIEHMKHLASKNKCFKSYIGMGYYNTRVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLMNFQTMITDLTALPMSNASLLDEGTAAAEAMSMCNNIHKGKRKTFVIANNCHPQTIDVCKTRAAGFDLKVVTVDLEDIDYKSGDVCGVLVQYPGTEGEVLDYGEFVKKAHAHGVKVVMATDLLALTVLKPPGELGVDIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAATYAVYHGPEGLKTIGQRVHGLAGVFALGLKKLGTVEVQDLPFFDTVKIKTSSAHAIADAANQSEINLRVIDGNTITVAFDETTTLEDVDKLFKVFGNGKPVSFTAASLAPEAQTAIPSGLIRKSPYLTHPIFNTYHTEHELLRYIHRLQAKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFSEIHPFAPVEQAQGYQEMFENLGNLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVPVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTNPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPDKLQPLGTISAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLENYYPVLFCGVNGTVAHEFIIDLRSFKNTAGIEPEDVAKRLMDYGFHGPTMSFPVPGTLMIEPTESESKAELDRFCDALISIREEIAEIEKGKADINNNVLKGAPHPLSVLMGDAWTKPYSREYAAFPASWLRSSKFWPSTGRIDNVYGDRNLVCTLLPASQVGEEQAAATA* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01227 1036 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 62 1027 IPR020581 GO:0004375|GO:0006546
Rops10g01227 1036 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 587 826 - -
Rops10g01227 1036 CDD GDC-P 128 505 IPR020581 GO:0004375|GO:0006546
Rops10g01227 1036 Pfam Glycine cleavage system P-protein 79 505 IPR020581 GO:0004375|GO:0006546
Rops10g01227 1036 Pfam Glycine cleavage system P-protein 523 798 IPR020581 GO:0004375|GO:0006546
Rops10g01227 1036 Gene3D Aspartate Aminotransferase, domain 1 148 501 IPR015422 GO:0003824
Rops10g01227 1036 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 70 1027 IPR003437 GO:0004375|GO:0006544
Rops10g01227 1036 SUPERFAMILY PLP-dependent transferases 79 504 IPR015424 -
Rops10g01227 1036 Gene3D Aspartate Aminotransferase, domain 1 835 975 IPR015422 GO:0003824
Rops10g01227 1036 Gene3D - 159 419 IPR015421 GO:0003824
Rops10g01227 1036 Gene3D - 587 814 IPR015421 GO:0003824
Rops10g01227 1036 FunFam Glycine cleavage system P protein 412 501 - -
Rops10g01227 1036 Coils Coil 695 715 - -
Rops10g01227 1036 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 836 974 - -
Rops10g01227 1036 NCBIfam aminomethyl-transferring glycine dehydrogenase 79 1020 IPR003437 GO:0004375|GO:0006544
Rops10g01227 1036 CDD GDC-P 548 943 IPR020581 GO:0004375|GO:0006546
Rops10g01227 1036 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 159 419 - -
Rops10g01227 1036 SUPERFAMILY PLP-dependent transferases 540 1021 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01227 Rops-Chr10 24795050 24800936 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01227 K00281 - gmx:100795673 1856.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01227 10 24795050 24800936 Rops10g01227 10 24795050 24800936 ECH
Rops9g02061 9 37874138 37880939 Rops10g01227 10 24795050 24800936 PCT