Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00916 ATGGCTGAGGAAGCTCCAAAGACAACAACAGCAACAACTCAAGAGGCAGAAGCGGTGCATAAGGAAGAGGAAGTTGTGGTAACTGCTGTTGCACTTGCTGACAAAACAGACACAACTACTGTTCCTGTAGAAAAAGACACTCAAGAGCCCGAGCCCGAGAAGAAGCCCATTGAAGACACTCTTCCTCCTCCTCTTCCTCGTGAGACTGATGTATCCAAACCCAGTGGTGGTGGTGATGAGAAAATGCCTGAGTCAGGTTCCTTCAAGGAAGAGAGCACCATAGTTTCTGACCTACCTGAAGCTGAGAAGAAGGCACTTCAAGAACTAAAAGTCCTTCTTCAAGAAGCACTCAACAACCACGAATTCTCTGCAAAAGAAGAAAAGCCTGAGCCCGTAGTAGCAGTACCAGCTGATGATAAGGAAAAGCCCGAGAAAGAAGAAGAAAAGCCCAAGGAGGAAGAACAAGTTTCAGAACCAGTTGCTGCTGCTGCTGACGTGGCACCACCAACATCAGAACCTGAAAAGCCCACAGAACAAGAGGAAAAAGTAGAAGAGAAGAAAGAAGAAGAAACACCAGCTGCAACAGTAGTGAAAGAAACAACTGAGGTAGCTGCTGCTGCTGCAGCTCCTTCTATTGATGATGATGGAGCAAAAACAGTTGAAGCTATTGAAGCGACCGTTGTAGCTGTAACTGTAGCTGACTCTTCTTCTGTTCCAGAAGAGAAACAAGCTTCACCACCACCACCACCACCATTGCAACCCGAAGAGGTTTCCATTTGGGGTGTGCCACTTCTTGCAGATGAAAGAAGTGACGTGATTCTCTTGAAGTTTCTACGTGCGAGAGACTTCAAAGTGAAGGATGCATTCACCATGATAAAGAACACAATTGCGTGGAGGAAAGAGTTCAGAATCGATGAGTTGTTGGAGGAAAATTTGGGTGATGATCTTGAGAAAGCTGTGTACATGCATGGTTTTGACAAGGAAGGTCACCCTGTGTGTTATAACATATATGGAGAGTTCCAGAACAAGGAGTTGTACAAGAAGACTTTTTCTGATGAGGAGAAGAGACAAAAGTTCCTGAGATGGAGAATTCAGTTTCTGGAGAAGAGTATCAGGAAGTTGGATTTCACACCTGGTGGCATAAGCACCATTGTTCAGGTCAATGATCTTAAGAATTCTCCTGGACCTGGTAAATGGGAGCTTAGACAAGCAACCAAACAAGCCCTTCAATTGCTTCAGGATAATTATCCTGAATTTGTAGCCAGACAGGTGTTCATCAATGTACCATGGTGGTACTTGGCAGTGAACAGAATGATAAGCCCTTTTCTTACCCAGAGAACCAAAAGCAAGTTTGTTTTTGCTGGGCCTTCCAAATCAGCTGAGACTCTTCTAAGATACATATCTCCTGAGCAACTTCCAGTTAAGTGTGGTGGACTTAGCAAAGATGGGGAATTCGGAATTACCGATGCTGTTACAGAAATTACAGTGAGGCCCGCTGCAAAACACACCGTGGAATTTCCAGTTACTGAGAACTGCCTACTCTCTTGGGAGCTAAGAGTAATAGGGTGGGATGTAAATTATGGTGCAGAGTTTGTGCCAAGTTCAGAAGGAAGCTATACTGTAATCATCCAGAAGGCTAGGAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAATTACAAAACTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCCAAGCTCTAAGAAGAAGAAACTCTTGTATCGTTCGAAGACCAAGCCTTCCTCTTCTAACTAA 1788 0.4446 MAEEAPKTTTATTQEAEAVHKEEEVVVTAVALADKTDTTTVPVEKDTQEPEPEKKPIEDTLPPPLPRETDVSKPSGGGDEKMPESGSFKEESTIVSDLPEAEKKALQELKVLLQEALNNHEFSAKEEKPEPVVAVPADDKEKPEKEEEKPKEEEQVSEPVAAAADVAPPTSEPEKPTEQEEKVEEKKEEETPAATVVKETTEVAAAAAAPSIDDDGAKTVEAIEATVVAVTVADSSSVPEEKQASPPPPPPLQPEEVSIWGVPLLADERSDVILLKFLRARDFKVKDAFTMIKNTIAWRKEFRIDELLEENLGDDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKRQKFLRWRIQFLEKSIRKLDFTPGGISTIVQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVARQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYISPEQLPVKCGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWDVNYGAEFVPSSEGSYTVIIQKARKVASSEEPVLCNNYKTGEPGKVVLTIDNPSSKKKKLLYRSKTKPSSSN* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00916 595 MobiDBLite consensus disorder prediction 1 15 - -
Rops10g00916 595 MobiDBLite consensus disorder prediction 234 255 - -
Rops10g00916 595 MobiDBLite consensus disorder prediction 174 195 - -
Rops10g00916 595 SUPERFAMILY CRAL/TRIO domain 319 481 IPR036865 -
Rops10g00916 595 MobiDBLite consensus disorder prediction 73 87 - -
Rops10g00916 595 Pfam CRAL/TRIO, N-terminal domain 255 294 IPR011074 -
Rops10g00916 595 MobiDBLite consensus disorder prediction 121 199 - -
Rops10g00916 595 MobiDBLite consensus disorder prediction 39 61 - -
Rops10g00916 595 Gene3D GOLD domain 493 589 - -
Rops10g00916 595 SMART CRAL_TRIO_N_2 270 295 IPR011074 -
Rops10g00916 595 ProSiteProfiles GOLD domain profile. 488 589 IPR009038 -
Rops10g00916 595 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 309 484 IPR001251 -
Rops10g00916 595 PANTHER PATELLIN-1 139 592 IPR044834 GO:0008289
Rops10g00916 595 SMART sec14_4 314 481 IPR001251 -
Rops10g00916 595 MobiDBLite consensus disorder prediction 1 100 - -
Rops10g00916 595 Gene3D - 190 492 IPR036865 -
Rops10g00916 595 CDD SEC14 315 479 IPR001251 -
Rops10g00916 595 Coils Coil 106 126 - -
Rops10g00916 595 SUPERFAMILY CRAL/TRIO N-terminal domain 95 311 IPR036273 -
Rops10g00916 595 PRINTS Cellular retinaldehyde-binding protein signature 273 295 - -
Rops10g00916 595 PRINTS Cellular retinaldehyde-binding protein signature 436 455 - -
Rops10g00916 595 MobiDBLite consensus disorder prediction 121 158 - -
Rops10g00916 595 Pfam CRAL/TRIO domain 318 478 IPR001251 -
Rops10g00916 595 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 490 586 IPR036598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00916 Rops-Chr10 20286549 20289496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00916 274 476 Acyl Lipid Metabolism Gene Families AT1G55840 27.397 2.85e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00916 - - gmx:100805585 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00916 10 20286549 20289496 Rops10g00916 10 20286549 20289496 ECH
Rops2g00710 2 10035321 10038468 Rops10g00916 10 20286549 20289496 PCT