Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00870 ATGGGCAATTGCTTCTCCGACGTCTCCGGAGAACGCGCCGCCATCGGCGGAATCGCCGGGAATCTTCTCAATCCGGTGAACGCTCCGAACGACGCCATCGATAAATTTCTCAAGTCTCGCGGCCACCACGGTCTCTTCTCTCAGATCGAGTTGTCGTTTTCCGCTTCAGGCTTGCGTGATCGTGATGTGTTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAAAGGAAAAAATGGAGCACTTGAGGAACTTTGTCGCACGGAAGTAGTTCTGAATTCGTTGAATCCCACATGGATTACTAACCAGACCCTCATTTATCATTTTGAAGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAAAGTAGATGTAAAGATGCTTAAGCTAGAAGACCAGCAATGTCTTGGTGAGGCGACCTGTACATTATCTGAGATAATTACAAAGTCTGATCGATCATTGACATTAGATCTACACACAGAAGATTCTATCAGATCTACCCACTCCCGAAACTGTGGGAAGGTCTCAGTGCATGCTGAGGAACGTGTTTCCTCAAAGACTGCAATAGAGATGACATTCAGGTGTTTAGATTTGGAATATAGAGATCTCTTCTCAAGAAGTGACCCCTTTTTACTGATATCAAAAGTTGTGGAAGGTGGTACCCAAATTCCCATTTGCAAAACTGAAGTTATAAAAAATGATCTCAACCCAATATGGAAGCCAGTATTCTTGAATATTCAACAAGTAGGAAGCAAGGACAGCCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAGATCCTTGGTAGAGTTGGAGAAGATTCATTGTAATGGCCAAGGGGAAAAATTATTTTTTCCCACTGCTGGTGAACAAAACCCTGATAAAAAGGTGATAAAGAGCCAGCTATTTGTGGAAAAATTTACTGAAAGTGTCCAATATACTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCGGTTGACTTTACAGTTTACCTTGAGGAACCATTTGTGGGTTCCCCAAATGCTAACCCTCTGAGGCCCCTGTTGTCAGGCTCAACAGCTGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTCGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAGCGATTTCCTACTTGGGGATTTGGAGCACGATCAATTGATGGACCCATCTCCCATTGTTTCAACTTGAATGGAAGTATTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCATACATAAGTGCCTTGCACAACGTATCCCTTGCAGGACCTACTCTTTTTGGACCTGTCATAAGCAATGCTGCGCTGATTGCCAGCCAATCTGTAGCAAGTGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAGGATGCTCTTGTTAAAGCATCTGACCTGCCATTATCAATCCTTATTGTTGGAGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTTGAAAGTTCATATGGACGCATTGCTTCACGTGATATAGTCCAATTTGTTCCATTTCGGGATGTTCAAAATGGAGAGTTTTCAGTTATTCAAGCTCTTCTGTCAGAGTTACCAACTCAATTTTTAACTTACATGCGGAGCAGAAATATCCAACCGAGCCTCTAG 1815 0.4253 MGNCFSDVSGERAAIGGIAGNLLNPVNAPNDAIDKFLKSRGHHGLFSQIELSFSASGLRDRDVFSKSDPMMVLYAKGKNGALEELCRTEVVLNSLNPTWITNQTLIYHFEVVQVLVFRVYDVDTQFHKVDVKMLKLEDQQCLGEATCTLSEIITKSDRSLTLDLHTEDSIRSTHSRNCGKVSVHAEERVSSKTAIEMTFRCLDLEYRDLFSRSDPFLLISKVVEGGTQIPICKTEVIKNDLNPIWKPVFLNIQQVGSKDSPLIIECYNFNSNGKHDLMGKVQRSLVELEKIHCNGQGEKLFFPTAGEQNPDKKVIKSQLFVEKFTESVQYTFLDYLAGGFELNFMVAVDFTVYLEEPFVGSPNANPLRPLLSGSTAASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARSIDGPISHCFNLNGSIHYCEVEGIQGIMMAYISALHNVSLAGPTLFGPVISNAALIASQSVASGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRIASRDIVQFVPFRDVQNGEFSVIQALLSELPTQFLTYMRSRNIQPSL* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00870 604 ProSiteProfiles C2 domain profile. 29 162 IPR000008 -
Rops10g00870 604 ProSiteProfiles C2 domain profile. 175 301 IPR000008 -
Rops10g00870 604 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 288 IPR035892 -
Rops10g00870 604 SUPERFAMILY vWA-like 396 549 IPR036465 -
Rops10g00870 604 FunFam Protein BONZAI 1 isoform A 195 314 - -
Rops10g00870 604 CDD C2A_Copine 47 166 - -
Rops10g00870 604 Gene3D C2 domain 52 197 IPR035892 -
Rops10g00870 604 PANTHER COPINE 40 603 IPR045052 GO:0005544
Rops10g00870 604 Pfam Copine 387 602 IPR010734 -
Rops10g00870 604 FunFam Protein BONZAI 1 51 194 - -
Rops10g00870 604 CDD C2B_Copine 195 290 IPR037768 -
Rops10g00870 604 Gene3D C2 domain 198 324 IPR035892 -
Rops10g00870 604 Pfam C2 domain 54 158 IPR000008 -
Rops10g00870 604 Pfam C2 domain 200 288 IPR000008 -
Rops10g00870 604 SMART C2_3c 48 161 IPR000008 -
Rops10g00870 604 SMART C2_3c 198 300 IPR000008 -
Rops10g00870 604 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 169 IPR035892 -
Rops10g00870 604 CDD vWA_copine_like 312 591 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00870 Rops-Chr10 19717525 19725364 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00870 - - gmx:100798141 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00870 10 19717525 19725364 Rops10g00870 10 19717525 19725364 ECH
Rops2g00672 2 9542346 9552475 Rops10g00870 10 19717525 19725364 PCT