Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00171 ATGGAGTTGCCAACAAAGAGAAAACCCTTCATCTGTTGGGTTTTCCTTTCAGTCATTGTCTTTGCTCAAGTTAGCGACGGTTTTTATCTGCCGGGAAGCTACATGCACACTTATTCCAATGGAGATCCTATATTTGCCAAAGTAAATTCTTTGACTTCTATTGAAACAGAGCTTCCCTTCAGCTACTACAGCCTCCCTTACTGCCCGCCCCCTGGTGGCGTAAAGAAAAGTGCTGAGAATCTGGGAGAACTCCTCATGGGAGATCAGATTGATAACTCACCCTACCGATTTCGGATGAATGTTAATGAGACAGTCTACCTGTGTACGACATCGCCATTGAACGAGCATGAGGTGAAGCTGCTCAAACAAAGAACACGTGATCTGTATCAAGTGAATATGATCCTTGACAACTTGCCAGTTATGAGGTTTACTACCCAAAATGGGATTAAAATCCAGTGGACAGGGTTCCCTGTTGGGTACACTCCATCTGATGGTGGTGCAGATTACATCATCAACCACCTTAAATTCACAGTCTTGGTTCATGAATATGAAGGAAGTGGAGTTGAAATTATTGGGACTGGGGAGGAAGGTTTGGGTGTTATTTCTGAAGCTGACAAGAAGAAGGCATCCGGGTATGAAATAGTTGGATTTCAGGTTGTCCCTTGTAGTGTTAAATATGATCCTGAAGCCCTGAAAAAGCACAAAATGTATGATAGTATCCCTGCTGTAAGCTGCCCAGCTGAGCTTGACAAGTATCAAGTAATAAGAGAGCAAGAAATGATATCATTCACATATGAGGTTGAATTTGTGAAAAGTGATATAAGATGGCCATCCCGTTGGGATGCTTATTTGAAGATGGAGGGTTCCCGAGTTCATTGGTTCTCAATTCTGAATTCACTTATGGTTATATTTTTCCTAGCTGGTATTGTTTTTGTCATTTTCTTAAGAACCGTAAGAAGGGACTTGACAAGGTACGAGGAGCTGGACAAAGAGGCACAAGCTCAGATGAATGAGGAGCTTTCTGGATGGAAACTTGTTGTGGGTGATGTATTTAGGGAGCCGGATTGCTCAAAGCTTCTCTGTGTAATGGTTGGAGATGGAGTTCAAATTCTTGGAATGGCTGCTGTTACTATTGTTTTTGCAGCACTTGGTTTCATGTCGCCAGCATCCCGAGGAATGCTACTAACTGGGATGATCATTTTATATCTTATCCTGGGAGTTGCTTCTGGCTATGTCAGCGTACGTTTCTGGAGGACCATTAAGGGAACATCAGAAGGGTGGAGATCAGTTTCCTGGTCTGCTGCATGTTTTTTTCCTGGAATTGCTTTCATTATTCTTACAATACTCAATTTTATTCTATGGGGCAGCAACAGTACTGGTGCTATACCCATCTCCTTGTATTTTGAGCTGTTCTTCCTCTGGTTCTGCATTTCAGTACCCCTTACCCTCATTGGAGGATTTATGGGGACAAAAGCTCAGCCAATAGAATATCCTGTGCGGACTAATCAGATCCCAAGGGAAATCCCGGCACGTAAATATCCATCATGGCTTCTTGTTCTTGGTGCTGGAACTCTCCCATTTGGAACCCTCTTCATTGAGCTCTTCTTTATCCTTTCCAGTATCTGGCTTGGGAGGTTCTATTATGTGTTTGGTTTCTTGTTGGTTGTTCTTCTATTGCTGGTTATTGTTTGTGCTGAAGTTTCAGTGGTCCTCACATATATGCATCTCTGTGTGGAAGATTGGCGGTGGTGGTGGAAGGCATTCTTTGCTTCAGGTTCTGTTGCTCTTTATGTCTTCTTCTACTCCATTAACTACTTGGTTTTCGACTTGCAGAGTTTGAGTGGACCTGTCTCAGCTACCCTTTACCTTGGATATTCACTACTCATGGCAATTGCAATCATGTTGTCCACTGGCACCATTGGCTTCCTTATGTCATTCTACTTTGTGCACTACTTGTTCTCATCAGTGAAGATAGATTGA 1980 0.4283 MELPTKRKPFICWVFLSVIVFAQVSDGFYLPGSYMHTYSNGDPIFAKVNSLTSIETELPFSYYSLPYCPPPGGVKKSAENLGELLMGDQIDNSPYRFRMNVNETVYLCTTSPLNEHEVKLLKQRTRDLYQVNMILDNLPVMRFTTQNGIKIQWTGFPVGYTPSDGGADYIINHLKFTVLVHEYEGSGVEIIGTGEEGLGVISEADKKKASGYEIVGFQVVPCSVKYDPEALKKHKMYDSIPAVSCPAELDKYQVIREQEMISFTYEVEFVKSDIRWPSRWDAYLKMEGSRVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDCSKLLCVMVGDGVQILGMAAVTIVFAALGFMSPASRGMLLTGMIILYLILGVASGYVSVRFWRTIKGTSEGWRSVSWSAACFFPGIAFIILTILNFILWGSNSTGAIPISLYFELFFLWFCISVPLTLIGGFMGTKAQPIEYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLVVLLLLVIVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFFYSINYLVFDLQSLSGPVSATLYLGYSLLMAIAIMLSTGTIGFLMSFYFVHYLFSSVKID* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00171 659 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 27 659 IPR004240 GO:0016020
Rops10g00171 659 Pfam Endomembrane protein 70 59 612 IPR004240 GO:0016020
Rops10g00171 659 Coils Coil 315 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00171 Rops-Chr10 5378063 5381405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00171 14 659 Miscellaneous Gene Families AT4G12650 84.056 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00171 K17086 - gmx:100782426 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00171 10 5378063 5381405 Rops10g00171 10 5378063 5381405 ECH
Rops9g01969 9 36398435 36402779 Rops10g00171 10 5378063 5381405 PCT