Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2599 ATGAGCATCACAAAAAGAGTAGGTGTTCTTGTTATGTACTTTGCACTGGTTTATCATGTGGATGCTAAAAAGAAAGTAATGCCAGTTGCTGGTGTTGATATCTACAAGGATAAAAACGTAGCTGCTGATAAACTTTCTCCTGGAGAAAAGATAAACAATGTCTTGAGCTTTGGAGCCAAAGGTGATGGCGAGTATGATTGCACTCAGGCTTTCATGGATGCATGGAGAGAAACTTGCCACTCCAAAGGGAATGCGAGAGTTTTGGTTCCTGAGGGAAGATTCGTGGTTTCTACAATGTTTTTCGCAGGTCCATGCACTACTCCAGATCCCGTAACAATCCAAGTTGTAGGCACTGTTGTGGCTACAACAGATATCAGTGAATATGTGAATGGTGAATGGCTCATGTTTGAGAGCATAGATGGTATAAGACTCATTGGTGGTGGTACTTTTGATGGCGTGGGCAAGGAATCATGGAAAACATCTGCTAACTGTAAAGTAGATCCCTCCGATACTTGCGTCAGAAACCCTTCTAGTTTATATTTCCGCAAAGTTAGGAATGGAATTATACAAAACATCAAATCCATAGACCCCAAAGGGTTTCACGTATTTGTGACTAATTGTGTTAACATTAGACTTCGACTACTTAAGCTTGTTGCACCAAGTGAAAGTCCTAACACTGATGGAATTCATATCAGCCAATCTGTCAATGTCAAAGTATCAAAAAATAACATTGAAACTGGAGATGATTGTATTTCCATGATACAAGGAGCCAACGATGTTCACATCAATAAAATGAATTGTGGTCCTGGACATGGTATTAGTATTGGAAGTCTTGGAAAGTATCCAGATGAGCTAGAAGTGAAAAACATTAGCGTGACGAACATCTCGATGGTTGGCACAACTAATGGCGTGAGAATCAAGACATGGCCAAATAAGCATCCAGGCTCAGCATCATTTATCACCTTCACTGACATCAACATGCAAAATGTTCAAAACCCTATCATCATTGACCAAGAATATGAATGCTCTAAAAACTGTCAAAACCAGCCTTCACTTGTACAGTTAAAAGATATTAGTTTTTCAAATATAAGAGGAACCACTCCTACACCAATTGCAGTGGATTTAAGGTGTAGCATGAAATTCCCTTGTGAAAAAGTTAAACTTGAGAACATAAACTTGTCGCTTGGACCCAAGCCTACCGGATCTAGATGTCAAAACATTAAACCAATTTACATGGGCTTGCAAAAGCCACCAACTTGTCCATAA 1266 0.3949 MSITKRVGVLVMYFALVYHVDAKKKVMPVAGVDIYKDKNVAADKLSPGEKINNVLSFGAKGDGEYDCTQAFMDAWRETCHSKGNARVLVPEGRFVVSTMFFAGPCTTPDPVTIQVVGTVVATTDISEYVNGEWLMFESIDGIRLIGGGTFDGVGKESWKTSANCKVDPSDTCVRNPSSLYFRKVRNGIIQNIKSIDPKGFHVFVTNCVNIRLRLLKLVAPSESPNTDGIHISQSVNVKVSKNNIETGDDCISMIQGANDVHINKMNCGPGHGISIGSLGKYPDELEVKNISVTNISMVGTTNGVRIKTWPNKHPGSASFITFTDINMQNVQNPIIIDQEYECSKNCQNQPSLVQLKDISFSNIRGTTPTPIAVDLRCSMKFPCEKVKLENINLSLGPKPTGSRCQNIKPIYMGLQKPPTCP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2599 421 Gene3D - 39 418 IPR012334 -
Pvu9g2599 421 PANTHER POLYGALACTURONASE 2 420 - -
Pvu9g2599 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
Pvu9g2599 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Pvu9g2599 421 PANTHER - 2 420 - -
Pvu9g2599 421 SUPERFAMILY Pectin lyase-like 49 420 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2599 Pvu-Chr9 36433858 36439103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2599 45 420 Glycoside Hydrolase AT4G18180 42.822 1.13e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2599 K01213 - gmx:106796220 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2599 9 36433858 36439103 Pvu9g2599 9 36433858 36439103 ECH
Pvu3g1116 3 26797484 26799741 Pvu9g2599 9 36433858 36439103 PCT