Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1116 ATGGCCATTGCAAAGAGTGCTGTTCTTATTTTGCTCTTTGCATTGGCCTGCAATGCGGATAATGCTCTAAAACTACCACGTATTGCTGGTCCTGACATGTTCAAGAATAAAAATGTGGCTAAGGATGTCCTCCTTCCTGGGGAGCAAATAATTAGCGTCATGGATTTTGGAGCCAAAGGTGATGGCAAATTCGATTGCACCCAGGCTTTCATGACTGCATGGCAAAAGGTGTGTCATCAAACCTCTGGGCCAGCCAGGCTTTTGATTCCTCAAGGCAGATTCTTGGTTTCATCAATGTATTTCAGTGGACCATGCACTTCTCAAACCCCAGTAACAATTCAAGTACAAGGGTATGTTATGGCTACCACGGATCTTTCGGAGTATGAAAACGGCGACTGGCTCATATTCCAGAAGCACGATGGCTTGAAAATTATCGGCGGGGGCACTTTCGATGGCCAGGGAAAACAGTCATGGTCATACTCCGAGAATTGCGAATCAAGTGCTGACGGTTCTTGCGCTAGGAATCCAAGCAGCCTTTTCTTCAGCGATAGCAGCAACGTGGTTGTACAGGGTATCAGAACTGTGAACCCCAAAGGCTTTCACATATTCATTACCAAATGTACAAACATAAGATTGAGAAAACTGAAGCTGGTTGCCCCGGAAACCAGCCCCAACACTGATGGCATTCATGTCAGCCACTCTGACACTGTGATAATGTCCAGAAACACCATTGCAACTGGGGATGATTGCATCTCTATGATACAAGGAGTCAAAAATGTTTTCATCAACAGACTCAAGTGTGGCCCTGGGCACGGTATAAGTATCGGTAGCCTTGGGAAATATCCGAATGAGGAAGAGGTGAGAGGCATTCGCATCCAGAATTGCTCATTGACCGGCACAACCAATGGCCTCAGATTGAAAGCATGGCCAGATAAATATCCAGGTTCAGCTTCAGATATAAGCTTCAGTAACATTATCATGCAAAATGTCAAAAACCCTATCATCATTGACCAAGAGTATGAATGTTATCCAAACTGCAAAAAGAAGCCATCACTTGTAAAGATCCAAAATGTTCATTTCCAAAATGTGAGAGGAACTACAACTTCACCACTTGCAGTGGACATAAGATGCAGCAAGCTGTTTGGGTGCCAAGGTCTTACAGTTAGAGACATTGACCTGAAGTTGGGAGATGCCCCAACCACCTCAAGATGTGTCAATGCTCAACCTATCTTTGCTGGCTTGCTAATGCCCCCACCTTGCGCATCATAG 1269 0.45 MAIAKSAVLILLFALACNADNALKLPRIAGPDMFKNKNVAKDVLLPGEQIISVMDFGAKGDGKFDCTQAFMTAWQKVCHQTSGPARLLIPQGRFLVSSMYFSGPCTSQTPVTIQVQGYVMATTDLSEYENGDWLIFQKHDGLKIIGGGTFDGQGKQSWSYSENCESSADGSCARNPSSLFFSDSSNVVVQGIRTVNPKGFHIFITKCTNIRLRKLKLVAPETSPNTDGIHVSHSDTVIMSRNTIATGDDCISMIQGVKNVFINRLKCGPGHGISIGSLGKYPNEEEVRGIRIQNCSLTGTTNGLRLKAWPDKYPGSASDISFSNIIMQNVKNPIIIDQEYECYPNCKKKPSLVKIQNVHFQNVRGTTTSPLAVDIRCSKLFGCQGLTVRDIDLKLGDAPTTSRCVNAQPIFAGLLMPPPCAS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1116 422 Gene3D - 45 413 IPR012334 -
Pvu3g1116 422 Pfam Glycosyl hydrolases family 28 82 408 IPR000743 GO:0004650|GO:0005975
Pvu3g1116 422 PANTHER - 2 421 - -
Pvu3g1116 422 SUPERFAMILY Pectin lyase-like 47 421 IPR011050 -
Pvu3g1116 422 PANTHER POLYGALACTURONASE 2 421 - -
Pvu3g1116 422 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Pvu3g1116 422 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1116 Pvu-Chr3 26797484 26799741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1116 50 420 Glycoside Hydrolase AT4G18180 43.041 1.08e-112 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1116 K01213 - gmx:100800324 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1116 3 26797484 26799741 Pvu3g1116 3 26797484 26799741 ECH
Pvu3g1116 3 26797484 26799741 Pvu9g2599 9 36433858 36439103 PCT