Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2543 ATGGATTCTTCAAGGGATGCGGGTGTTGTAGCAGGGACAGTGCTAATTCCCATGCGTTTTGTGTGGCCATATGGAGGAAGGAGTGTGTTTCTCTGCGGTTCTTTCACACGGTGGTCTGAGCTTCTACCGATGTCGCCAGTGGAAGGTTGTCCAACAGTGTTTCAAGTTATTTATAATTTGCCACCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAACATCAAGCTTACGTACCAGGAGAGTATGGGATGGTCAACACTGCCTTCTTGCCAACTGATTCCAACTACATGCCTGTTTTGAATCCAGATGCACCTGGAAATAGCATGGATGTGGATAATGAGGCTTTTCGCCGAGTGGTCCGGGTGACTGATGGTACCTTCAGTGAGGGGCTGCCAAGAATATCAGATGCAGATGTACAAATATCCCGTCAGCGTATTTCTGCATTTCTGTCTTCCCACACTGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTACCAGTAAAGCAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCTCTTTGGGACTTGTGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCGTGGGTCCAATCTGACAGAGGAAGAGCTTGAAACACATTCCATATCAGCTTGGAAAGAAGGAAAGTCTTATCTAAATAGGCAGAACAATGGAAATGGAACTGTGTTTTCCACACGTTTTATCCATTCAGGTCCATATGACAATCTGAAAGATATTGCTGTGAAAATCCTCCAAAAGGAGGTTTCAACTGTTCCTATTATCCATTATTCTTCTGAACAGGCTTCATTTCTGCAGTTACTACATCTTGCTTCACTTTCAGGAATACTTAAATGCCTTTGTAGGTATTTTAGGCACTGCTCTAGTTCCTTGCCTGTACTTCAATTTCCAATCTCTGCAATACCTGTGGGCACGTGGGTACCCAAAATCGGGGAATCAAATCGGCAGCCTCTAGCAATGTTGAGACCAACCGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCTATAGTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCGAAGAACAGAGCATATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCTCTGCATAAAGTGATGGAACGCTTGGCAAATCCAGATACACATTGA 1374 0.4309 MDSSRDAGVVAGTVLIPMRFVWPYGGRSVFLCGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQAYVPGEYGMVNTAFLPTDSNYMPVLNPDAPGNSMDVDNEAFRRVVRVTDGTFSEGLPRISDADVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDLCKGQFVGVLSALDFILILRELGNRGSNLTEEELETHSISAWKEGKSYLNRQNNGNGTVFSTRFIHSGPYDNLKDIAVKILQKEVSTVPIIHYSSEQASFLQLLHLASLSGILKCLCRYFRHCSSSLPVLQFPISAIPVGTWVPKIGESNRQPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPDTH* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2543 457 CDD E_set_AMPKbeta_like_N 17 92 - -
Pvu9g2543 457 Gene3D - 323 457 IPR046342 -
Pvu9g2543 457 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 455 - -
Pvu9g2543 457 Pfam CBS domain 351 396 IPR000644 -
Pvu9g2543 457 SMART cbs_1 170 219 IPR000644 -
Pvu9g2543 457 SMART cbs_1 352 400 IPR000644 -
Pvu9g2543 457 Pfam Glycogen recognition site of AMP-activated protein kinase 16 93 IPR032640 -
Pvu9g2543 457 Gene3D Immunoglobulins 16 107 IPR013783 -
Pvu9g2543 457 SUPERFAMILY CBS-domain pair 350 457 IPR046342 -
Pvu9g2543 457 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 8 455 - -
Pvu9g2543 457 SUPERFAMILY E set domains 16 95 IPR014756 -
Pvu9g2543 457 Gene3D - 141 322 IPR046342 -
Pvu9g2543 457 ProSiteProfiles CBS domain profile. 164 226 IPR000644 -
Pvu9g2543 457 SUPERFAMILY CBS-domain pair 151 321 IPR046342 -
Pvu9g2543 457 ProSiteProfiles CBS domain profile. 348 405 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2543 Pvu-Chr9 35948007 35957362 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2543 - - gmx:100785692 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1071 3 25293630 25303292 Pvu9g2543 9 35948007 35957362 PCT