Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1071 ATGTTCAGTCCAAGCATGGATTCTGCGAGGGATGCTGGTGGTGTGGCAGGGGCTGTGCTAATTCCCATGCGGTTCGTGTGGCCATATGGGGGAAGAAGTGTGTATCTAAGTGGTTCTTTCACACGGTGGTCTGAACTTCTACAAATGTCGCCAGTGGAAGGCTGCCCAACTGTGTTTCAAGTTATTCATAGCTTGGCCCCTGGTTATCATCAGTACAAGTTTTATGTTGATGGAGAATGGCGGCATGATGAGCATCAACCTTGTTTATCTGGAGAATATGGGATAGTTAATACCGTTTTATTGGCTACTGATCCTAATTTTGTACCTGTTTTAACTCCAGAGATAGTTTCTGGATCTAACATGGATGTGGATAATGAGGCTTTTCGACGCATGGTCCGATTGACAGATGGTACACTAAGTAATGTGTTGCCACAAATATCAGATGCTGATGTACAGACCTCTCGTCAGCGTATTTCTTCATTCCTATCTACTTGCACAGCATATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATGTTGATCTTCCTGTGAAACAGGCATTTCACATACTGCATGAGCAGGGAATTCCCATGGCTCCTCTCTGGGACATCTGCAAGGGGCAGTTTGTTGGAGTTCTTAGTGCCTTGGATTTTATTTTAATTTTAAGAGAGCTTGGAAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAATGGACAGCATTTACGCAAGGTTTTATCCGTGCAGGTCCATATGATAATCTGAAAGAGATTGCTCTGAAGATTCTGCAAAATGGAATTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGCTCATTTCCCCAGCTACTACATCTTGCTTCACTTTCAGGAATCCTTAAATGCATTTGCAGGTATTTTAGGAATTGTACTAGTTCATTGGCCATACTTCAACTTCCAATCTGTGCAATCCCTGTGGGCACGTGGGTGCCCAAAATTGGAGAGTCAAATTGCCAGCCTCTTGCAATGTTGAGACCAAATGCTTCGCTTACTTCAGCCCTAAACTTATTAGTTCAAGCTCAAGTAAGTTCAATACCAATAGTTGATGATAGTGACTCATTACTGGATATATATTGTCGAAGTGATATAACAGCTTTGGCAAAGGACAGAACTTATACACATATTAATCTCAATGAAATGACTGTTCATCAGGCATTGCAATTGGGGCAGGATTTTTACAGTTCTTTCGAACCGAGAAGTCAAAGATGTCAGATGTGTTTGCGAACTGATTCTCTGCATAAAGTGATGGAACGTTTGTCACATCCAGGTGTGAGGCGGCTTGTGATTGTGGAAGCTGGCAGCAAGCGGGTAGAAGGCATCATATCAGTGAGTGACATATTCAAGTTCTTCCTTGGTTAG 1443 0.4248 MFSPSMDSARDAGGVAGAVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLAPGYHQYKFYVDGEWRHDEHQPCLSGEYGIVNTVLLATDPNFVPVLTPEIVSGSNMDVDNEAFRRMVRLTDGTLSNVLPQISDADVQTSRQRISSFLSTCTAYELLPESGKVVTLDVDLPVKQAFHILHEQGIPMAPLWDICKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKWTAFTQGFIRAGPYDNLKEIALKILQNGISTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCTSSLAILQLPICAIPVGTWVPKIGESNCQPLAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLNEMTVHQALQLGQDFYSSFEPRSQRCQMCLRTDSLHKVMERLSHPGVRRLVIVEAGSKRVEGIISVSDIFKFFLG* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1071 480 CDD E_set_AMPKbeta_like_N 22 100 - -
Pvu3g1071 480 ProSiteProfiles CBS domain profile. 343 401 IPR000644 -
Pvu3g1071 480 SUPERFAMILY E set domains 21 102 IPR014756 -
Pvu3g1071 480 SUPERFAMILY CBS-domain pair 156 317 IPR046342 -
Pvu3g1071 480 SUPERFAMILY CBS-domain pair 347 479 IPR046342 -
Pvu3g1071 480 Pfam CBS domain 433 479 IPR000644 -
Pvu3g1071 480 Pfam CBS domain 348 392 IPR000644 -
Pvu3g1071 480 SMART cbs_1 430 479 IPR000644 -
Pvu3g1071 480 SMART cbs_1 176 225 IPR000644 -
Pvu3g1071 480 SMART cbs_1 348 396 IPR000644 -
Pvu3g1071 480 Gene3D - 328 480 IPR046342 -
Pvu3g1071 480 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
Pvu3g1071 480 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 480 - -
Pvu3g1071 480 Gene3D Immunoglobulins 18 101 IPR013783 -
Pvu3g1071 480 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Pvu3g1071 480 Gene3D - 146 320 IPR046342 -
Pvu3g1071 480 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1071 Pvu-Chr3 25293630 25303292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1071 - - gmx:100810976 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1071 3 25293630 25303292 Pvu3g1071 3 25293630 25303292 ECH
Pvu3g1071 3 25293630 25303292 Pvu9g2543 9 35948007 35957362 PCT