Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2459 ATGGCAACTGAGAGTCCAATTAGAATCTCCGAAGCTGGGGGTAAATGGCCCTCGCATAAGGAAGCTACAGCTTTCGGTTCAACATCTCATAACATGGCGACAGAGGATTTGGGTATACTTTTGAAGGGCCATAGGTTCCACAGTGGGAGAAAGGATGTAACACCAAATCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTTTGGCCATAGAAAACCTCTTACCCCAGCAGATCATCACCCAGAATGCAAGCTTTGCAGCTCTAAGCAGTACGATGCAAAATTGCGAGTCTGAAAAACAATTGCGAGCTGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTTGCATCCTGGGAAAATCGCCATCTAGGACGTCATATTGGGAGTTTTAGAAATAATTGGAGAATGTCTGCTGCAGATGATAGTGATAAAAGTTCTCTACCTTTGCCTCAAAGGACTCTTTCCACACACAAGGAGGAGTTGGAAGACGAATCACACCAACAGACATATGATGACGAATTAATTAAGGCAAGCGGAGTATGGCGTAGACCTGATGCAGCTTCATTGGCATCTCAACCTAAAAACGTGGTTGATTTAATTCAGGAGGATTTTCCTCGCACCATGTCACCTGTATATAATAAGTCTCATTCCGAAAGTCACGGACTGGTGGATAAACCAATAGACTTAGAAGTCGGTTCTAGTTCTTCTCATGATCCCCCTATTACTACAGTAGAGGCTGCTAAACCTACTATAGGAAGGGTCTCATCAATTGTTGATACCCATGCCCCAGTTGCAAGCTCATCATCTCTTGAATCCACTGGCAGCATTGGTGTTAGTCACTTAGACATTGCAACTGTTGCATCTCAACTAAAGGCTCTTGGTGTATCTAATCTATCACACTCAGAAAGTCTGAGTTACGAAAAGACAAGCTTCCAGAACAATTTGATGCAAAGTCAGCAACAAAACAATGCATCTGATATACCTAGTGTCAATTCTCAAAATGTAAATTCTATGTATGTTGGTAGGGAACAGTTTCCTTTTAATTCAAGCAAGTTCTCCAATGTCCAGCCACTACTGCAGTCGTCTGGGTTTACACCTCCCCTATATGCCACAGCAGCTGCTTATATGAACTCAGCAAATCCATTTTACACAAATATGCAGGCCTCAGGTATGTATACTCCACAGTATGTTAGTGGATACACTGTAAATCCCACAGTTTTTCCTCCATATGTTACTGCATACCCTCCTCATGGTGCTGTACCATTTGTTGTTGATGGAGCTACTAGTTCTAGTTATACTCCACTAACACCTGGGGTTTCAACTGGGGGAAACATTTCACATGGAACTGAAATGGTACAGGCAAACAAGTACCTTGGGCAATTTGGATTTCCTCTGCCGCCTTCTTTTGGTGATCCCATGTACATGCAATATCATCAGCAGCCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGGTGTTAACCAAATTAGCCCTTATGATTCACAGAAAAGGCCCAGTACTGGTACTTATTTGGATGATAAAAAAATACCTGATCAGAGATCTGCTACTAATATGAACTCCAGAAGAGGCGGATTAGTGATTCCTAGTTATTTTGGACACATGCCAAACATGGGTATTTTAATGCAGTATCCAAGTTCACCACATCCTAGCCCAGTTTTATCAGGATACCCAGAAGGAAGTCCCGGGCTTCTAGGTGGTAATAATGAAATAAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGCATAATATCTGGATGGCAAGGTCAGAGGTCATTTGACAGTGGTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGGAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGCTCTGATCAACATGGAAGTCGATTTATCCAGCAGAAGTTGGAAAGTTGCAGTGTTGAAGAGAAGACATTGGTGTTTAAGGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTTGGCAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCAGATCGACTGGTTGGCCAGATACTACCTCTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAGAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAAAACGGTAACCATGTAATTCAAAAGTGCATTGAATCGATTCCAACCAAAAAAATTAGTTTTATACTATCTGCATTTTGTGGTCAAGTTGCTATTCTATCAATGCATCCCTATGGATGCCGAGTCATACAGAGAGTCCTAGAACATTGCACAGACGAGACTCGATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTATGATCTTGCTCAGGACCAGTATGGTAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATTATCAGCAAGTTGTCAGGACATATTGTTGAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAGAAATGTTTGGAGTATGGTGATGCCATTGAACGGGAGATGCTAATTGCAGAGATATTTGGGCATGGTGAACAAAGTGATAATTTATTGATAATGATGAAAGATCAATTTGCTAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAAACAGCAAGCAATGTTACTTTCTCAAGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACACCTGGCTCGTGA 2928 0.4153 MATESPIRISEAGGKWPSHKEATAFGSTSHNMATEDLGILLKGHRFHSGRKDVTPNRSGSAPPSMEGSFLAIENLLPQQIITQNASFAALSSTMQNCESEKQLRADPAYLAYYSSNVNLNPRLPPPLASWENRHLGRHIGSFRNNWRMSAADDSDKSSLPLPQRTLSTHKEELEDESHQQTYDDELIKASGVWRRPDAASLASQPKNVVDLIQEDFPRTMSPVYNKSHSESHGLVDKPIDLEVGSSSSHDPPITTVEAAKPTIGRVSSIVDTHAPVASSSSLESTGSIGVSHLDIATVASQLKALGVSNLSHSESLSYEKTSFQNNLMQSQQQNNASDIPSVNSQNVNSMYVGREQFPFNSSKFSNVQPLLQSSGFTPPLYATAAAYMNSANPFYTNMQASGMYTPQYVSGYTVNPTVFPPYVTAYPPHGAVPFVVDGATSSSYTPLTPGVSTGGNISHGTEMVQANKYLGQFGFPLPPSFGDPMYMQYHQQPFVEGYGISGHFDPLAPRASGVNQISPYDSQKRPSTGTYLDDKKIPDQRSATNMNSRRGGLVIPSYFGHMPNMGILMQYPSSPHPSPVLSGYPEGSPGLLGGNNEIKLSPASGRNGGIISGWQGQRSFDSGHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFSSDQHGSRFIQQKLESCSVEEKTLVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFCGQVAILSMHPYGCRVIQRVLEHCTDETRCQFIVDEILESVYDLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIVELSQHKFASNVVEKCLEYGDAIEREMLIAEIFGHGEQSDNLLIMMKDQFANYVVQKVIDICSEKQQAMLLSQVRIHAHALKKYTYGKHIVARLEHQFGENQTPGS* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2459 975 Pfam Pumilio-family RNA binding repeat 833 865 IPR001313 GO:0003723
Pvu9g2459 975 Pfam Pumilio-family RNA binding repeat 912 942 IPR001313 GO:0003723
Pvu9g2459 975 Pfam Pumilio-family RNA binding repeat 795 830 IPR001313 GO:0003723
Pvu9g2459 975 Pfam Pumilio-family RNA binding repeat 868 901 IPR001313 GO:0003723
Pvu9g2459 975 Pfam Pumilio-family RNA binding repeat 651 685 IPR001313 GO:0003723
Pvu9g2459 975 Pfam Pumilio-family RNA binding repeat 766 789 IPR001313 GO:0003723
Pvu9g2459 975 Pfam Pumilio-family RNA binding repeat 688 719 IPR001313 GO:0003723
Pvu9g2459 975 Pfam Pumilio-family RNA binding repeat 723 756 IPR001313 GO:0003723
Pvu9g2459 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 791 827 IPR001313 GO:0003723
Pvu9g2459 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 647 682 IPR001313 GO:0003723
Pvu9g2459 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 864 899 IPR001313 GO:0003723
Pvu9g2459 975 SMART pum_5 828 863 IPR001313 GO:0003723
Pvu9g2459 975 SMART pum_5 906 941 IPR001313 GO:0003723
Pvu9g2459 975 SMART pum_5 647 682 IPR001313 GO:0003723
Pvu9g2459 975 SMART pum_5 755 790 IPR001313 GO:0003723
Pvu9g2459 975 SMART pum_5 683 718 IPR001313 GO:0003723
Pvu9g2459 975 SMART pum_5 864 899 IPR001313 GO:0003723
Pvu9g2459 975 SMART pum_5 791 826 IPR001313 GO:0003723
Pvu9g2459 975 SMART pum_5 719 754 IPR001313 GO:0003723
Pvu9g2459 975 SUPERFAMILY ARM repeat 631 964 IPR016024 -
Pvu9g2459 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 828 863 IPR001313 GO:0003723
Pvu9g2459 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 719 754 IPR001313 GO:0003723
Pvu9g2459 975 Gene3D - 628 972 IPR011989 -
Pvu9g2459 975 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 968 - -
Pvu9g2459 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 683 718 IPR001313 GO:0003723
Pvu9g2459 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 906 941 IPR001313 GO:0003723
Pvu9g2459 975 MobiDBLite consensus disorder prediction 514 549 - -
Pvu9g2459 975 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 627 967 IPR033133 GO:0003723
Pvu9g2459 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 755 790 IPR001313 GO:0003723
Pvu9g2459 975 CDD Pumilio 642 963 IPR033712 GO:0003723
Pvu9g2459 975 PANTHER PUMILIO HOMOLOG 5 45 968 - -
Pvu9g2459 975 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2459 Pvu-Chr9 35034869 35043457 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2459 K17943 - gmx:100811036 1700.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1483 3 33804601 33807997 Pvu9g2459 9 35034869 35043457 PCT