Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1483 ATGGCAACTGAGAGTCCAATCAGGATCTCTGAAGCTGGGGGGAAATGGCCGACTCTTAAGGAAGCTGCAATATTTGGTTCACCATCTCATCATATGGCAACGGAGGACCTGGGTATATTTTTGAATGGTCATAGGTTCCATGGCAGTGGAAAAGATGTGTTACCCAATCGAAGTGGCAGTGCACCTCCAAACATGGAAGGCTCATTTCTTGCCAAAGAAAACTTATTATCTCAGAACACCACTAGAGATGTCAGTCTGGGATCTCTCAACAGAGCTGTGCAAAAATATGATAGTGGTAAAGGGTCCTTTCATTTGTCACAAGAAACACTTGCAACACACAAGGAGGAGTTTGAGGATGATTCAACCCAACAGCTGTATGATAATGAAATACATAAGGCTAGTGGAAAATGGCATAGACAGGATGTGGCTTCAACATCGTCTAAGCACAAAAAATTAGTACTGGAAGATCTTCTGCATACCATGTCACCTGTATATAATAAGTCTCTTGGAGTGGTGGATGAACTAATTGATGTAGATACTGGTTCAAATTCTTCTCATGACCCTTCTGTTACTACAGTGGATGCTTTAAAGCCTACTATAGGTGGAGATGATATAAGAGTGTCATCATTTGTTGATTACCCTGCCCCTGTCTCAAGATCATCATCATCTCTCAATTCCACTGAAAGCAGGGGTTTTAATCATTTAGATGTTACAATTGTAGAATCTCAGTTAAGGGCTCTCACTGTATCTAATCTACCAAATTCAGAAAGTCAGAGTTATGAAGATAAATGGAAGAACAGCTTACAGAATAATTTGATGCAACAACACCACCAACAAAACTATCCATGTGAAGTTCCTAGCACCAATTCTCAAAGTGAAAAATGTGCATACATTGGTATGGAGCAGCCTCTTCACAGTTTAAGCAAGTTCTCATCTGATGTCCAGTCTGTATTGCCTGTACTGCATTCATCTGGGTATACACCTCCACTATATGCTACGGCAGCAGCTTATATGACCTCAACAAATCCATTTTACACTAATTTTCAGGCTTCAGGTCTATATTCTCCGCAATTTGTAGGGGCATACCCTTTTAGTCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTCGTTGATGGAGCTACTGGTTCTAGTTTTACTCCCCAAGCAGCAGGGGTTTCTTCTATTGTGGGAAACATTTCACACGGTGCTGAAATGATACATGCAAACAAGGTTTTTGGCCAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGAGCCTTTTTACATGCAATATCCTCAGCAACCTTTTGTGGAGGGATACAATGTATCTGGTCATCTGCTGACACCTAGAGCCAGTGTTGGTGGGCAAATTGGTCCTTATGATTCCCAAAAAAGGCCCAATAGTGGTGCTTACTTGGATGAAAAAAAATTACATAATCAGAGAAGTGGTGCTAGTTTGAATTCTAATAGAGGTGGGCTAATGCATCCTGGTTATTTTGGACATCCTTCAAACATGAGTTTCGAAACCCAGTTTCCAAGTTCTCCACTTTCTAGACCAGTCCTGTCCGGATACCCAGAAAGTAGTCCTGGTCTTCCAGGTGGAAGGAATGAAAGGAGACTCTCTCCTGCTTCTGGCAAAAACAGAGGTTTATTATCTGGGTGGCAAAGTCATAGAGCCTCAGACAGTGCTCACAACCCCAAAATTGCTATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGACATTATTGGACACATAGTTGAATTTAGCACTGATCAGCATGGGAGCCGTTTTATACAGCAGAAGTTGGAAAACTGTGGTGTGGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCTAAATTAATGACTGATGTATTTGGCAATTACGTAATCCAAAAGTTTTTTGAGTATGGAGGCCCTGAGCAGAGGAAGGAACTTGCAAATTGTCTTCTTGGTCAGATACTGCCTTTAAGTCTTCAGATGTATGGTTGTCGAGTAATCCAAAAGGTATGTAATTTGTATTGA 2079 0.4132 MATESPIRISEAGGKWPTLKEAAIFGSPSHHMATEDLGIFLNGHRFHGSGKDVLPNRSGSAPPNMEGSFLAKENLLSQNTTRDVSLGSLNRAVQKYDSGKGSFHLSQETLATHKEEFEDDSTQQLYDNEIHKASGKWHRQDVASTSSKHKKLVLEDLLHTMSPVYNKSLGVVDELIDVDTGSNSSHDPSVTTVDALKPTIGGDDIRVSSFVDYPAPVSRSSSSLNSTESRGFNHLDVTIVESQLRALTVSNLPNSESQSYEDKWKNSLQNNLMQQHHQQNYPCEVPSTNSQSEKCAYIGMEQPLHSLSKFSSDVQSVLPVLHSSGYTPPLYATAAAYMTSTNPFYTNFQASGLYSPQFVGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGSSFTPQAAGVSSIVGNISHGAEMIHANKVFGQFGFPLQPSFGEPFYMQYPQQPFVEGYNVSGHLLTPRASVGGQIGPYDSQKRPNSGAYLDEKKLHNQRSGASLNSNRGGLMHPGYFGHPSNMSFETQFPSSPLSRPVLSGYPESSPGLPGGRNERRLSPASGKNRGLLSGWQSHRASDSAHNPKIAIFLEELKSGKGRRFELSDIIGHIVEFSTDQHGSRFIQQKLENCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGGPEQRKELANCLLGQILPLSLQMYGCRVIQKVCNLY* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1483 692 Gene3D - 577 692 IPR011989 -
Pvu3g1483 692 MobiDBLite consensus disorder prediction 517 556 - -
Pvu3g1483 692 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 688 - -
Pvu3g1483 692 ProSiteProfiles Pumilio RNA-binding repeat profile. 631 666 IPR001313 GO:0003723
Pvu3g1483 692 ProSiteProfiles Pumilio RNA-binding repeat profile. 667 692 IPR001313 GO:0003723
Pvu3g1483 692 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 575 692 IPR033133 GO:0003723
Pvu3g1483 692 ProSiteProfiles Pumilio RNA-binding repeat profile. 595 630 IPR001313 GO:0003723
Pvu3g1483 692 SUPERFAMILY ARM repeat 590 690 IPR016024 -
Pvu3g1483 692 Pfam Pumilio-family RNA binding repeat 671 688 IPR001313 GO:0003723
Pvu3g1483 692 Pfam Pumilio-family RNA binding repeat 599 633 IPR001313 GO:0003723
Pvu3g1483 692 Pfam Pumilio-family RNA binding repeat 638 665 IPR001313 GO:0003723
Pvu3g1483 692 SMART pum_5 631 666 IPR001313 GO:0003723
Pvu3g1483 692 SMART pum_5 595 630 IPR001313 GO:0003723
Pvu3g1483 692 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1483 Pvu-Chr3 33804601 33807997 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1483 K17943 - gmx:100819166 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1483 3 33804601 33807997 Pvu9g2459 9 35034869 35043457 PCT