Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2446 ATGCCACCGGCGCTGTCTGATCCGTTGTCAGCGACTACTGCCAGCTCCGACGCCGTTTTGAAGCGATCGGCGCCGGAGAATCGGCGATTCGGCGATCTTAGAGGGCTGCAGTGGCGGATAAATCTTGGGGTGTTGCCGTGCTCGACTTCGACTTCAATTGATGATTTTCGTCGAGTCACCGCCAATTGCAGAAGAAGGTATGCTAGCTTGAGAAGGCGCCTTCTGGTTGAACCACATGTTCCAAAGGATGGAACTAATTCACCCAATCTTGCCATTGACAATCCACTTTCACTGAATCCAGATAGTACATGGAGTCGCTTTTTCCGCAATGCAGAGCTAGAGAGAATGGTTGATCAGGATTTATCACGATTATACCCAGAACATGGCAGTTATTTTCAGGCACCAGGATGCCAGAGCATGTTGAGACGAATTTTGTTACTGTGGTGTCTAAGGAACCCAGAATGTGGTTATAGACAAGGAATGCACGAGTTACTTGCTCCTCTGCTTTATGTTCTGCAAGTTGATTTGGAGCGTCTCTCAGAAGTTCGGAAGCTTTATGAAGATCACTTTACAGACAGATTTGATGGCCTTTTAGGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAAAAAGTCTCCAGAATTGATGGAGGATGGATTTGATTCCCTTGGAAATTCCATTAAAGTCAATAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTATTAAGTGATGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATGGAACATGATGCGTACTGTATGTTTGAGGCTTTAATGAACGGGGCCCATGGTTCAGTTGCAATGGTTGATTTCTTCTCTTCCTCCCCTGTATCCGGGTCCCACAGTGGCCTTACTCCTGTGATTGAAGCTTCTACTGCATTGTATTATTTGTTGTCTCAAGTAGATTCATCTCTTCACAGCCATCTTTTTGATCTTGGGGTTGAACCCCAGTACTTTTCTCTTCGATGGCTGCGAGTTTTATTTGGACGAGAGTTTTCACTTGCCAACCTCTTGATCATCTGGGATGAGATATTTGCATCAGAGAATAACAGCAATGGAAAAGGTTCCGATGACTGTGAGTTCAGAATCTTAAATTCACCCCGAGGAGCATTTATCTTAGCTATGGCAGTAGCAATGTTACTTCATTTAAGATCTTCACTGCTTGCAACTGAAAACCCTACAAGGTGTCTCCAGAGATTATTAAACTTCCCTGAAGACATTAATATAAAAAAACTACTAGAGAAGGCCAGATCCTTGCAGGCTGTTGCTCTAAGTGTTGATATTTCATCCTCATCACTTTTGCTTATGGGGTTCCATTACCAAAGTAAATCGATTTATAGTAGATCTGCGACCCTTCCATCTGAATCTCTGTCTCCGAAAACTTCTCTGAATTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCAGAAGGCTGAAGAACACAGGCAAGATGGTCTAGAAAAACAGGTTCCCACCCGGAAAAAGGGGTGGACAGAAAAAGTAAAATTCAGTTTGAGAAGAGCAGAATCTGACCCTCCTAGATCAAGGTTTCAGAGTGCCAAAAATTTTAGGCGCAATTTGTTGCAAGATCTACGCAAGGCACTTGGCTCAGAGGAAGATGCAGAGAAAATGAAGCCAGATGAAACCCTTTGCCAGAATGATAATCCTTCTGAAGCAGTTGAAGTACAAGAAGACAGTAGCTCCAATGGTGACAACAATTACTCATCTGATGACAGATCTCCAGGTGTACATTCTGGCAGTGAGGAAGACTTGTCTATATATTCTGACCCAACTAGCCCCCCTAATGAGGCCAATGATCATGAAATAACCTCAGAGAAAAGTAGTCTTGCATCTGATTCATCCCTAGACGAACGTAATGAAACATCAGGTATTAGTTCGCCATTGCCAATCTCCTATCCTCTTGAGAACATTTCTCAGACATTGTTCAGCAATACAGGAAATTCTGAATGCAATGGAACTGCAGATAGCAGTTCCAGTGATCAACCCCTTCCAATCTCTGATCTTCCTGAGAACATTTCTCAGACATCAATCTGCAATACAGGAAATTCTGAATGCAATGAAACTTCAGATACCACTCCCAATGACCCACCCCTTCCAATCTCTGATCCTTCTGAGAACATTTCTCAGACATCATTCCACAATACAGGAAACTCTGAATCGAATGAAACTTCAGATACCAGTCCCAATGATCCACCCCTAACATCAGGGTGCAATACCAATGATGCTGAAAATAAAGTCACACCTCCTAAAGAGAAAAAGCATAATAAGTTGCAGTGGCTTTGGCCCTTTGGACGGAATACTGTTGAGGCTATATCTGAGAAAGCTGGTGCTGCCGAATCTACAAACCGTGGTAGCACTCAAAATAATGCTCCACATGCCACCTCATCCACAACTAATGAGCATGGTGGTTCTGTTAGCTGCAGAGGAGAATCGGTAGACCAGAATGTTATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTTGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACCGAAAAGGCCAGGTTACTGCTGTGACAGCTCTCAAAGAGCTTCGGAAAATTAGCAATCTTTTGTCAGAGATGTGA 2682 0.4306 MPPALSDPLSATTASSDAVLKRSAPENRRFGDLRGLQWRINLGVLPCSTSTSIDDFRRVTANCRRRYASLRRRLLVEPHVPKDGTNSPNLAIDNPLSLNPDSTWSRFFRNAELERMVDQDLSRLYPEHGSYFQAPGCQSMLRRILLLWCLRNPECGYRQGMHELLAPLLYVLQVDLERLSEVRKLYEDHFTDRFDGLLGQENDLSYSFDFKKSPELMEDGFDSLGNSIKVNSLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFEALMNGAHGSVAMVDFFSSSPVSGSHSGLTPVIEASTALYYLLSQVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLANLLIIWDEIFASENNSNGKGSDDCEFRILNSPRGAFILAMAVAMLLHLRSSLLATENPTRCLQRLLNFPEDINIKKLLEKARSLQAVALSVDISSSSLLLMGFHYQSKSIYSRSATLPSESLSPKTSLNLVPDSYWEEKWRVAQKAEEHRQDGLEKQVPTRKKGWTEKVKFSLRRAESDPPRSRFQSAKNFRRNLLQDLRKALGSEEDAEKMKPDETLCQNDNPSEAVEVQEDSSSNGDNNYSSDDRSPGVHSGSEEDLSIYSDPTSPPNEANDHEITSEKSSLASDSSLDERNETSGISSPLPISYPLENISQTLFSNTGNSECNGTADSSSSDQPLPISDLPENISQTSICNTGNSECNETSDTTPNDPPLPISDPSENISQTSFHNTGNSESNETSDTSPNDPPLTSGCNTNDAENKVTPPKEKKHNKLQWLWPFGRNTVEAISEKAGAAESTNRGSTQNNAPHATSSTTNEHGGSVSCRGESVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAVTALKELRKISNLLSEM* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2446 893 MobiDBLite consensus disorder prediction 806 838 - -
Pvu9g2446 893 MobiDBLite consensus disorder prediction 571 602 - -
Pvu9g2446 893 Pfam Rab-GTPase-TBC domain 114 173 IPR000195 -
Pvu9g2446 893 Pfam Rab-GTPase-TBC domain 265 367 IPR000195 -
Pvu9g2446 893 Gene3D - 305 444 - -
Pvu9g2446 893 MobiDBLite consensus disorder prediction 803 838 - -
Pvu9g2446 893 MobiDBLite consensus disorder prediction 612 626 - -
Pvu9g2446 893 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 9 531 - -
Pvu9g2446 893 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 759 826 - -
Pvu9g2446 893 MobiDBLite consensus disorder prediction 558 787 - -
Pvu9g2446 893 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 303 438 IPR035969 -
Pvu9g2446 893 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 326 IPR035969 -
Pvu9g2446 893 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 102 283 - -
Pvu9g2446 893 MobiDBLite consensus disorder prediction 525 544 - -
Pvu9g2446 893 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Pvu9g2446 893 SMART tbc_4 20 409 IPR000195 -
Pvu9g2446 893 MobiDBLite consensus disorder prediction 635 772 - -
Pvu9g2446 893 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 9 531 - -
Pvu9g2446 893 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 759 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2446 Pvu-Chr9 34834058 34839042 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2446 K18469 - gmx:100782008 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2446 9 34834058 34839042 Pvu9g2446 9 34834058 34839042 ECH
Pvu3g1470 3 33555109 33560993 Pvu9g2446 9 34834058 34839042 PCT