Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1470 ATGCCGCCGGCTCTGATGGATCCTCCATTGCCGGAATCGTCTTCGGTGCTGTCTTTTTCCTCCGACATTGTTTTTCCGGGAACGGAGCCGGGTAATCGGCGATTCGGGGATCTTAGAGGTCTGCAGTGGCGTATAAATCTTGGGGTGTTGCCATCTTCTTCCATTGATGATCTTCGTCGTGCCACAGCTAATTCTAGAAGGAGATATGCCAGTTTGAGAGGGCGCCATTTGGTTGATCCTCATATTGTAAAGGATGAAAGTAATGCGCCCAATCTTGTCATGGATAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGATAGAGAGAATGATTGATCAGGATTTGTCACGTTTATACCCAGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGACGAATTTTGCTACTATGGTGTCACAAACACCCTGAGTGCGGTTACAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTACTCCAATATGATGTGGAGTGTCTCTCAGAAGTTCGAAAGCTTTATGAAGATCACTTCACTGACAGATTTGATGACCTCCTTTGTCAAGAGAATGATCTTTCTTACAACTTTGATTTTAAAAAATCTTCAGACTCGAAGGAGGATGGAATTGACTCCAATGGAAATGCAAAGAAAATCAAGAGTCTTGATGAGCTTGACCCCAGCATACAGAACATTGTATTGGTAAGTGACGCTTATGGGGCAGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATCGAACATGATGCTTATTGTATGTTTGATGCTTTGATGAACGGGGCTCGTGGTTCAATTGCAATGATCGATTTCTTCTCTTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTATTGTCTCATGTGGATTCATCTCTGCATGGCCATCTTGTTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTCAGCAACCTTTTAGTAATCTGGGATGAAATATTTTTATCAGATAATAGTAAAGCGGATAAAGATGCTGAGGACAATGCAGACTCTGGTTTTAGGATCTTCAATTCGTCTCGAGGAGCATTTATCTGCGCTATGGCTGTAGCAATGACGCTTCATTTAAGATCTACGCTTCTAGCTGCAGAAAATCCTACAACCTGTCTTCAGAGATTATTAAACTTCCCAGAGAACACTGATATTCAAAAACTAATAGAGAAGGCTAAATCCTTGCAGGCCCTTGCATTAAGTGCTGAGTTTTTGTCCACTAGACCTTCATTTGTCGAGTATTATAACCAGGCTAAACCAGTTATTGTCAGATCTCGCACCCTTTCATCTGACTCAATATCTCCCAAAGCTCCTCTGAGTTTGGTACCCGAGAGCTACTGGGAAGAAAAGTGGAGAGTTGTCCACAAGGCTGAAGAACTCAAACAAGATGCAGTAGAAAAGCAGGTTTCCACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTGAAAACAGAATCTGACCCGTCTTCACCAAGCTCTAAGAGTGGTAAAAAGAAATCCAAGTCACCAGTTAGGCGCGGTTTGTTAGACGATCTATCTAAGGAACTTGGCTTTGAGGAAGATACTGAAAATCCCTACAGTCTTGATAATCTGCCTGCAACAGTTGAAGAGGAGCAACGGGAAGACGGTTTGGAATGTAGCAACAGTGATTATCCTGCAGATAGATGTCTAAGTCGAAACACAAGTGGTGTGGAAAACTCATCTGCTATTTCTTGCTCGGCTAGCCCTCCTAACGAGGCCAATGATCACAAAAATGACTGTGAGAAGAGTAGTGTTGGGTCTAATTTATCCCTTGATGGAATTAATGAAGCCTCACTTTGTAGTCCCGTTGATTCACCTCTTCCAATCTCTGATCATCCTGAGAACGCATCAGATACGACACGGAGAAATAATAGTAATTCTGCCGGAAATTCAACTACGCATTCTAAGGAGAGAAAATTGAACAGATTTCCGTGGCTATGGAAGTTTGGGCGTAGTAATGGCGAGTTTACTTTAGAGAAAGGAAGTGATGCTTCTGAGACAGTAAAACCTGCTAACAGTTGTGATAATCAAAGCAATACAGTACCCTCTTCTACAGCCAATGCACATTGTAGTTCTGTTGGCTACAAAGGGGAATCTACAGAGCAGAATGTGACGGCCACTATGAGGATTATTGGGCAATCAATGCTTGGGCATATCCAGGTGATAGAGAGTGCTTTCCAACAGTGGGGCGAGGGAGCATCATTGGATAACATGTCTAACAATGTTGTGGTTGGTGAAGAGCAGTTGAGTCCCATGTCAGCTCTGAAGGAGCTACGTAAAATTAGCAATCTTTTGTCTGAGATGTGA 2475 0.4315 MPPALMDPPLPESSSVLSFSSDIVFPGTEPGNRRFGDLRGLQWRINLGVLPSSSIDDLRRATANSRRRYASLRGRHLVDPHIVKDESNAPNLVMDNPLSQNPDSTWSRFFRNAEIERMIDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCHKHPECGYRQGMHELLAPVLYVLQYDVECLSEVRKLYEDHFTDRFDDLLCQENDLSYNFDFKKSSDSKEDGIDSNGNAKKIKSLDELDPSIQNIVLVSDAYGAEGELGIVLSEKFIEHDAYCMFDALMNGARGSIAMIDFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLVIWDEIFLSDNSKADKDAEDNADSGFRIFNSSRGAFICAMAVAMTLHLRSTLLAAENPTTCLQRLLNFPENTDIQKLIEKAKSLQALALSAEFLSTRPSFVEYYNQAKPVIVRSRTLSSDSISPKAPLSLVPESYWEEKWRVVHKAEELKQDAVEKQVSTRKKGWTEKVKFSLKTESDPSSPSSKSGKKKSKSPVRRGLLDDLSKELGFEEDTENPYSLDNLPATVEEEQREDGLECSNSDYPADRCLSRNTSGVENSSAISCSASPPNEANDHKNDCEKSSVGSNLSLDGINEASLCSPVDSPLPISDHPENASDTTRRNNSNSAGNSTTHSKERKLNRFPWLWKFGRSNGEFTLEKGSDASETVKPANSCDNQSNTVPSSTANAHCSSVGYKGESTEQNVTATMRIIGQSMLGHIQVIESAFQQWGEGASLDNMSNNVVVGEEQLSPMSALKELRKISNLLSEM* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1470 824 MobiDBLite consensus disorder prediction 658 693 - -
Pvu3g1470 824 Pfam Rab-GTPase-TBC domain 114 197 IPR000195 -
Pvu3g1470 824 Pfam Rab-GTPase-TBC domain 268 368 IPR000195 -
Pvu3g1470 824 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 303 443 IPR035969 -
Pvu3g1470 824 Coils Coil 810 824 - -
Pvu3g1470 824 MobiDBLite consensus disorder prediction 529 641 - -
Pvu3g1470 824 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 99 284 - -
Pvu3g1470 824 MobiDBLite consensus disorder prediction 602 629 - -
Pvu3g1470 824 MobiDBLite consensus disorder prediction 552 570 - -
Pvu3g1470 824 SMART tbc_4 30 378 IPR000195 -
Pvu3g1470 824 MobiDBLite consensus disorder prediction 675 690 - -
Pvu3g1470 824 MobiDBLite consensus disorder prediction 717 743 - -
Pvu3g1470 824 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 755 - -
Pvu3g1470 824 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 755 - -
Pvu3g1470 824 Gene3D - 307 450 - -
Pvu3g1470 824 ProSiteProfiles TBC/rab GAP domain profile. 33 368 IPR000195 -
Pvu3g1470 824 MobiDBLite consensus disorder prediction 583 597 - -
Pvu3g1470 824 MobiDBLite consensus disorder prediction 722 743 - -
Pvu3g1470 824 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 328 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1470 Pvu-Chr3 33555109 33560993 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1470 K18469 - gmx:100816501 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1470 3 33555109 33560993 Pvu3g1470 3 33555109 33560993 ECH
Pvu3g1470 3 33555109 33560993 Pvu9g2446 9 34834058 34839042 PCT