Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2396 ATGAATGTGAGTAATTTCGCATTTTCCATAGCCATGGCTGTTCTGTGTCTATCTAGCATAGTGGTCACAGAAGCAGAATTCCAATTCCCCAAAGAAATAGCCTCAAAGCTTAGTCGTGACCCTCAAATCCTTTCACTGGCATCAACAGATTATGGCCAAATAGTTCAGAAAACCCCATTAGAAGTTTTTGAGCCATCTTCGGTTAGTGATATCTCAGCTTTGATCAATTTCTCAAACTCTCTTCCCACCCCATTCACCATAGCCCCCAGAGGCAAAGCTCACTCGATTCTTGGCCAAGCCCTAACAGGAAATGGGGTGGTGTTGAACATGACTAACCTCAATGGGTCACTGATTTTTGTTTCAAAATGTGATGGAGAGAATCCATTGAATTGCTATGCTGATGTTGGTGGTGAAGTGGTGTGGATTGATGTGTTGCATGCAACCCTTGAACGTGGACTCACACCTCTCTCTTGGACTGATTATCTGTATTTGACTGTTGGTGGAACTCTGTCTAATGCTGGAATCAGTGGCCAAGCCTTTCGATTTGGTCCCCAGATCTCCAATGTTCTTGAGTTGGATGTTGTCACAGGGAAAGGAGACCTTGTGAGTTGCTCTAGGGAGAAGGAGTCAGAGTTATTTTATGGTGTTCTTGGAGGATTAGGTCAATTTGGTGTAATAACAAGAGCAAGAATACTTCTAGGACCTGCACCTACTAGGGTGAAATGGCTACATCTACTTTACAACAACTTCACTGCATTTTCGAGCGACCAAGAACATTTAATCTCTTTTACTGCAGCAGATTATGTAGAAGGCATGCTTCTGCTGAATCAGCCACCCTTGGATCTTTCCTTTTATCCAGATTCTGATCATCAAAGGATAACTTCATTAGTAACTCAAAATGGCATAATCTACATCATAGAACTTGTCAAATACTATGACAACAACTCTAATGCATTCGTGGAGAAGGATGTGGCAGATTTGGTAAAAGGGCTAAACTTCGTACCAACATTTATCTTCGAAAAAGATGCATCGTACGAGGATTTTCTGAATAGAGTTCTTGCAGAAGAGTTATTTCTAAGGTCAAAAGGACTTTGGGAAGTTCCTCATCCTTGGTTGAACATCTGGATTCCAAGATCTCGAATCTCAGATTTTAACGAAGGTGTCTTCAAGAACATTATTCTTGCGCAAAACCTTTCTAGCGGAATTGCTTTAATATACCCAATGAACCGAAACAAGTGGGATGATAAGATGTCACCAGTTACACCAGAGGAAGATGTTTTCTACGCTGTAAGTCTTTTGCGTGCTACAAGTTCAAGAGATATGGTGAAGAAATTGCAGGATCAAAACCAACAAATATTACAGTTCTGTAAGGATGCTGGTATTCAGATCACGGAATATCTAACTGGGAACAAAACACAACAGCAATGGATGGAACACTTTGGCTCCAAATGGGAACTTTTTGCTGATAGAAAAGATCAATTTGATCCCAAAAGAATATTGTCACCTGGACAAGGAATTTTCCAATCCAACCCATATAAAAAAATTGTTTAA 1551 0.4049 MNVSNFAFSIAMAVLCLSSIVVTEAEFQFPKEIASKLSRDPQILSLASTDYGQIVQKTPLEVFEPSSVSDISALINFSNSLPTPFTIAPRGKAHSILGQALTGNGVVLNMTNLNGSLIFVSKCDGENPLNCYADVGGEVVWIDVLHATLERGLTPLSWTDYLYLTVGGTLSNAGISGQAFRFGPQISNVLELDVVTGKGDLVSCSREKESELFYGVLGGLGQFGVITRARILLGPAPTRVKWLHLLYNNFTAFSSDQEHLISFTAADYVEGMLLLNQPPLDLSFYPDSDHQRITSLVTQNGIIYIIELVKYYDNNSNAFVEKDVADLVKGLNFVPTFIFEKDASYEDFLNRVLAEELFLRSKGLWEVPHPWLNIWIPRSRISDFNEGVFKNIILAQNLSSGIALIYPMNRNKWDDKMSPVTPEEDVFYAVSLLRATSSRDMVKKLQDQNQQILQFCKDAGIQITEYLTGNKTQQQWMEHFGSKWELFADRKDQFDPKRILSPGQGIFQSNPYKKIV* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2396 516 SUPERFAMILY FAD-linked oxidases, C-terminal domain 237 507 IPR016164 GO:0003824|GO:0050660
Pvu9g2396 516 Gene3D - 41 507 IPR016167 -
Pvu9g2396 516 SUPERFAMILY FAD-binding/transporter-associated domain-like 37 235 IPR036318 GO:0050660
Pvu9g2396 516 ProSiteProfiles PCMH-type FAD-binding domain profile. 55 236 IPR016166 GO:0071949
Pvu9g2396 516 Gene3D - 110 238 IPR016169 -
Pvu9g2396 516 Pfam FAD binding domain 60 205 IPR006094 GO:0050660
Pvu9g2396 516 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 237 507 IPR015345 GO:0009690|GO:0019139|GO:0050660
Pvu9g2396 516 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 10 508 - -
Pvu9g2396 516 PANTHER GULONOLACTONE OXIDASE 10 508 - -
Pvu9g2396 516 Gene3D - 239 466 IPR016170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2396 Pvu-Chr9 34223306 34229917 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2396 K00279 - gmx:100793158 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2396 9 34223306 34229917 Pvu9g2396 9 34223306 34229917 ECH
Pvu3g1415 3 32821118 32824801 Pvu9g2396 9 34223306 34229917 PCT