LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g2370	ATGTTGTCGAGAATGGAGGCTGGGAAGAAGAGTGGTGGGGGTTCTAGTGCCCCGAAGAAGTTGCTAAAGGATGTTGAAACCATTAACAAAGCTTTGTACTTGGATAGAGGGTCTTCAAGGAGTTCAATACCTAGTGTAAATTCTCGATCTAAATTCACTGGGAAATCTCAGTTACCTGATCCCAAATCTAAGTCTAAAGCAAGTGGTAATAATCATAATAATGATGATGATGATGGTGTTCAGAAGGATAAGAAGTCCATTTGGAATTGGAGGCCTCTAAGGGCCCTTTCCCACATCCGAAATAAGAGGTTTAATTGTAGTTTTTATCTGCAAGTTCATTTGATTGAAGGGTTGCCTCCAAGTTTTGAGAATGCTAGTATTGCTGTGTACTGGAAAAGGCGTGATGGGGTTCTTGTGACTGGTGCTGCCAAGGTGATTCAGTCTGTGGCTGAATTTGAAGAGAAGTTGACCTACACTTGCTCGGTGTATGGCAGTAGGAGTGGACCTCACCATTCTGCCAAGTATGAAGCAAAGCATTTTTTGCTATATGCTTCGCTTCTGAGTGCGCAGGAGATGGATTTGGGAAAGCACCGGGTGGATCTGACAAGGTTGCTTCCTCTCACTCTGGAGGAGCTTGAGGAGGAGAAGAGCTCGGGGAAGTGGACTACTAGTTTTCGACTATCAGGAGTGGCTAAGGGTTCTGTGATGAATGTCAGTTTTGGCTATACGGTGGTTGGTGATAATACCAGTGCTACCAGAGACAGCCATAATGCGTCTAACGTATTGACTTCCAGGCAGAATAGTATTGCTCTGATGAAGCAAGAGGCTAAACCCCGACAGTTTGATGGAAGCAGCAGGATGAGGCGTACCTCTAGTTTGCAATTCTCACCTCGAGGTTCAGATGAGGTAAAGGATCTTCATGAGGTGTTGCCATCAACTAAGTCTGCTCTAGCCAGCTCAATAGACATCTTATATAAGAAATTTGATGAAGAAAAGGTTAGTTCTCTGCATGGCGAAGCAGAAGTTGATTCATTCACTGAAAATCTTGCGTCAATCAAACCAGATGCATATGCTTCCGTTCTTGGAAAAGAAACATTTGATGAGCATGTGAGTAAGGCTGAAGATAAATGTCCAGTGCATGACGAACCTGGACTCTCTGTGTTTCAAGAAAAGCTGGAGATAATTAAACCAGATGACAATTCTTTACCTGATTCCGCAAATGAAAAGCTTGAAGAGTTTCAAGGTAATGATTTTGTTGTTGTTGATAAGGGCATAGAACTATCATCAAGTGAACCTGTTGTAACAGAGGAATTCATTGTGAAGGCTCCTGAAGATGCTTCTACAGTTCTTGGTATATCTGGTATACAAGAACCTTTTGAAGACAGTGTTAAATATGATTTTCTGGATGAGGTAAATGATAGTTCTAAGGACCAGGTAGTGGTAGAGGAATTTACTGGCAAAGAGGATGGCTTTGATAGTGATACTAATGAGCTGCTCCTGCAAGAACTAGAATCTGCTTTAAATAGTGTATCAAATTTGGAGAGAGTGGCACTAGAATCTCCCAAAACAGCAGAATTTAAATCTGAACATAAGATGACAAAGTCACATAGCTTGGATGATGTTACTGAATCAGTTGCCAGTGAGTTTTTAAGCATGTTAGACTGTAGTCCAATGGCGTTGAGTTGTGAAAGTGAGCCTGAATCTCCAAGAGAGCTACTTTTAAGACAATTTGAGAAGGAGGCTTTGGATGGGGACTTCTCCTCTTTGTTTGATTTTGAAATGAACCACGATAATGAAGCAGATGGTGGCTATGATGGTTCCACTGCATCTGAGCAGTGGAACTTTTCTGAAGATGTTAACTCATCATCCTTTTTCCAAGAGCTGCAGGAGGAGCATCTAGCTGAGTCTCAGGATGTGAGGAGCAAACAGAGGGCTCAGATACTAGAAGACATGGAAACAGAAGCCTTGATGCGTCAATGGGGTTTGAATGAGGAGGCTTTTCATCGTTCTCCACCAAAAGATTTTACTGGTTTTGGAAGTCCAATTCCTTTGCCTCCTGAAGAGACTCCTATATTGCCTCCTCTTGATGATGGGTTGGGCCCTTTTCTTCAGACAAAAGACGGGGGTTTCCTACGCTCTATGAATCCCTCACTTTTCAAGAATTCTAAAAGTGGTGGGAGTTTAATCATGCAGGTATCCAACCCTGTCGTGGTACCTGCAGAAATGGGTTCTGGGATAATGGAGGTTTTGCAGTGTTTGGCTTCAGTGGGAATTGAAAAGCTCTCAATGCAGGCAAAGGAGTTAATGCCGCTAGAAGATATCACAGGGAAGACAATGCAACAGGTAGCATGGGAAGCTATGCCTGTCTTAGAAGGAGCAGAGAGGCAAAGCCATTTGCAGCATGATCCAGCAACAGGGCAAGGCAGTGTTCATCTGCAAAGGGACTTGAAAGGAATGCCGTCTGGACAAAAGTCTGGCAAGTTTAGTTCTAGAACAGTGGCCAACCAACTAGGTTCAGAGTTTGTTTCAGTTGAAGACCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATCCAATCTGGGATGTCAGAAGAGGAGGCACCGTCAAACATCATTGCACAGTCCATTGGGGATATTTCGGCTCTGCAGGGCAATGGTGTTGATATTAGTGGGTCCCTTGGCCTGGATGGTGCTGCTGCTTTGCAGTTGATGGATGTAAAAGATGGGACTGATGGCGGTGATGGTGTTGATGGAATAATGGGCCTATCATTAACTCTTGATGAATGGATGAGGCTGGATTCAGGTGAGATTGATGATATAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCAGCCCATCATGCCAACTCTTTTGACTTCATTCGTCAGAGTTCGAAGGGAGAGAAGAGACGAGGCAAAAGCAGAAGATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAACTCCGTGACCCTCTGAGAAATTACGAGCCGGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGAGTTCATGCTTCCAAAGCAAAAAATTTACAATAGTGTGTCTTTCATAATGAAAAACAATGACGAGGATGATGATAGGGAAATCCTAGCGAAGGTGGACACGAAGGACACCCAGAAAGAGGAGAAAAGTTCTGACGAGGAAGAGGGCATTCCTCAGTTCAGAATCACAGAAGTCCATGTGGCAGGTCTGAAGCCTGAGCCTCAGAAAAAGAAGCTCTGGGGCACTTCAAGCCAGCAACAATCTGGTTCTCGCTGGTTGCTTGCTAATGGAATGGGGAAGGGCAATAATAAGCTTTCATTGATGAAATCAAAGGGTGCATCTAAATCTAATGCTCCAGCTACCACAAAGGTGCAACCTGGTGACACCTTGTGGAGCATATCATCTCGTGTTTTTGGCAATCGAGGGAAATGGAAGGAGTTGACAGCACTAAATCAACATATAAGAAACCCCAATGTCATTATACCAAATGACACCATAAGACTCAGCTGA	3555	0.4346	MLSRMEAGKKSGGGSSAPKKLLKDVETINKALYLDRGSSRSSIPSVNSRSKFTGKSQLPDPKSKSKASGNNHNNDDDDGVQKDKKSIWNWRPLRALSHIRNKRFNCSFYLQVHLIEGLPPSFENASIAVYWKRRDGVLVTGAAKVIQSVAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAQEMDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGVAKGSVMNVSFGYTVVGDNTSATRDSHNASNVLTSRQNSIALMKQEAKPRQFDGSSRMRRTSSLQFSPRGSDEVKDLHEVLPSTKSALASSIDILYKKFDEEKVSSLHGEAEVDSFTENLASIKPDAYASVLGKETFDEHVSKAEDKCPVHDEPGLSVFQEKLEIIKPDDNSLPDSANEKLEEFQGNDFVVVDKGIELSSSEPVVTEEFIVKAPEDASTVLGISGIQEPFEDSVKYDFLDEVNDSSKDQVVVEEFTGKEDGFDSDTNELLLQELESALNSVSNLERVALESPKTAEFKSEHKMTKSHSLDDVTESVASEFLSMLDCSPMALSCESEPESPRELLLRQFEKEALDGDFSSLFDFEMNHDNEADGGYDGSTASEQWNFSEDVNSSSFFQELQEEHLAESQDVRSKQRAQILEDMETEALMRQWGLNEEAFHRSPPKDFTGFGSPIPLPPEETPILPPLDDGLGPFLQTKDGGFLRSMNPSLFKNSKSGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPVLEGAERQSHLQHDPATGQGSVHLQRDLKGMPSGQKSGKFSSRTVANQLGSEFVSVEDLAPLAMDKIEALSMEGLRIQSGMSEEEAPSNIIAQSIGDISALQGNGVDISGSLGLDGAAALQLMDVKDGTDGGDGVDGIMGLSLTLDEWMRLDSGEIDDIDNISEHTSKLLAAHHANSFDFIRQSSKGEKRRGKSRRCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFMLPKQKIYNSVSFIMKNNDEDDDREILAKVDTKDTQKEEKSSDEEEGIPQFRITEVHVAGLKPEPQKKKLWGTSSQQQSGSRWLLANGMGKGNNKLSLMKSKGASKSNAPATTKVQPGDTLWSISSRVFGNRGKWKELTALNQHIRNPNVIIPNDTIRLS*	1185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g2370	1184	Pfam	LysM domain	1138	1183	IPR018392	-
	Pvu9g2370	1184	MobiDBLite	consensus disorder prediction	37	83	-	-
	Pvu9g2370	1184	MobiDBLite	consensus disorder prediction	276	299	-	-
	Pvu9g2370	1184	Gene3D	LysM domain	1135	1182	IPR036779	-
	Pvu9g2370	1184	MobiDBLite	consensus disorder prediction	69	83	-	-
	Pvu9g2370	1184	Coils	Coil	496	516	-	-
	Pvu9g2370	1184	ProSiteProfiles	C2 NT-type domain profile.	96	244	IPR019448	-
	Pvu9g2370	1184	SMART	LysM_2	1136	1184	IPR018392	-
	Pvu9g2370	1184	MobiDBLite	consensus disorder prediction	1049	1072	-	-
	Pvu9g2370	1184	Pfam	N-terminal C2 in EEIG1 and EHBP1 proteins	101	246	IPR019448	-
	Pvu9g2370	1184	CDD	LysM	1138	1183	IPR018392	-
	Pvu9g2370	1184	MobiDBLite	consensus disorder prediction	1118	1140	-	-
	Pvu9g2370	1184	ProSiteProfiles	LysM domain profile.	1135	1183	IPR018392	-
	Pvu9g2370	1184	MobiDBLite	consensus disorder prediction	1	21	-	-
	Pvu9g2370	1184	MobiDBLite	consensus disorder prediction	1122	1140	-	-
	Pvu9g2370	1184	MobiDBLite	consensus disorder prediction	37	68	-	-
	Pvu9g2370	1184	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	1	1183	-	-
	Pvu9g2370	1184	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	1	1183	IPR039614	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g2370	Pvu-Chr9	33876951	33881454	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g2370	-		-	gmx:100815106	1734.15

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g2370	9	33876951	33881454	Pvu9g2370	9	33876951	33881454	ECH
	Pvu3g1381	3	32404535	32408477	Pvu9g2370	9	33876951	33881454	PCT