Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2355 ATGAAGATAGTTGTAACCCTCATCTTGAGTTTATCCCTGCTCTCTCTCTCCCACGCTTCTGTGGTAGATTTCTGTGTGGCAGATTACACAGCTCCCAATGGCCCTGCAGGTTACTCATGCAAGAACCCTGCAAAGGTGACAGTGAATGACTTTGTCTACTCTGGCCTTGCCACTGCTGGCAACACCTCAAACATCATCAAAGCTGCAGTGAGTCCAGCATTTGATGCTCAATTCCCTGGTGTCAATGGCCTTGGAATTTCTGTTGCACGTTTGGACTTGGCTTCCGGTGGGGTCATCCCACTCCACACACACCCTGGAGCCTCAGAACTGTTGGTTGTAGTAGAGGGTCAAATCTGTGCTGGATTCGTTGATTCTGGCAACAATGTGTACCTCAAAACCCTCGAAAAGGGTGACATCATGGTGTTCCCTCAGGGCTTGTTGCACTTCCAAATCAACTCTGGTGACTCTCAGGGTTTAGCTTTTGTTAGCTTCAGCAGTGCCAACCCTGGCCTGCAGATTCTGGACTTTGCTCTCTTCAAGAGTGACTTCCCCACTGAACTCATCACCGAAACCACTTTCATTGATGCTGCTGTGGTGAAGAAGCTGAAGGGTGTTCTTGGAGGGTCAGGTTAA 633 0.4913 MKIVVTLILSLSLLSLSHASVVDFCVADYTAPNGPAGYSCKNPAKVTVNDFVYSGLATAGNTSNIIKAAVSPAFDAQFPGVNGLGISVARLDLASGGVIPLHTHPGASELLVVVEGQICAGFVDSGNNVYLKTLEKGDIMVFPQGLLHFQINSGDSQGLAFVSFSSANPGLQILDFALFKSDFPTELITETTFIDAAVVKKLKGVLGGSG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2355 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Pvu9g2355 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Pvu9g2355 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Pvu9g2355 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 206 - -
Pvu9g2355 210 Gene3D Jelly Rolls 18 209 IPR014710 -
Pvu9g2355 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 7 206 - -
Pvu9g2355 210 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Pvu9g2355 210 CDD cupin_OxOx 18 206 - -
Pvu9g2355 210 SMART Cupin_1_3 54 200 IPR006045 -
Pvu9g2355 210 Pfam Cupin 55 198 IPR006045 -
Pvu9g2355 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2355 Pvu-Chr9 33650737 33651892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2355 1 209 Miscellaneous Gene Families AT5G20630 66.667 6.53e-101 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2355 - - gmx:100806553 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1362 3 32093599 32094587 Pvu9g2355 9 33650737 33651892 PCT