Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1362 ATGATTCTCATTATCTGCCTCGTTTTCTCTCTTTTCTCCTTCTCCCATGCTTCTGTCCTAGATTTCTGCGTGGCGGATCATGCAGGTCCTATTGGTCCTGCAGGATACTCCTGCAAGAAGCCTTCAAAGGTCACAGCAGATGATTTTGCTTACAGTGGCCTTGGCATTGCTGGTAACACCTCAAACATTATCAAAGCTGCAGTGACCCCTGCATTTGATGCTCAGTTTGCTGGTGTCAATGGCCTTGGTATATCCGCAGCCCGCTTGGACTTAGCAGCAGGTGGAGTTATACCACTCCATACTCATCCTGGAGCTTCAGAATTACTTGTTGTGATACAAGGAAGCATCCTGGCGGGATTCATTTCATCTGACAACACTGTCTACCTCAAAACTCTTAAGAAGGGGGATGTTATGGTATTCCCTCAAGGCTTGCTGCACTTCCAAATCAATGCAGGTGGTTCTTCAGCCCTGGCTATTGTTAGCTTCAGTAGCTCCAATCCTGGTCTGCAAATTCTGGACTTTGCTTTGTTCAAAAGTAATTTCCCCACACCACTGATAGTGGAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGCTGTTCTTGGAGGTTCAGGCTAA 627 0.4657 MILIICLVFSLFSFSHASVLDFCVADHAGPIGPAGYSCKKPSKVTADDFAYSGLGIAGNTSNIIKAAVTPAFDAQFAGVNGLGISAARLDLAAGGVIPLHTHPGASELLVVIQGSILAGFISSDNTVYLKTLKKGDVMVFPQGLLHFQINAGGSSALAIVSFSSSNPGLQILDFALFKSNFPTPLIVETTFLDAALVKKLKAVLGGSG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1362 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Pvu3g1362 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Pvu3g1362 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Pvu3g1362 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Pvu3g1362 208 CDD cupin_OxOx 15 204 - -
Pvu3g1362 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 204 - -
Pvu3g1362 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Pvu3g1362 208 SMART Cupin_1_3 52 198 IPR006045 -
Pvu3g1362 208 SUPERFAMILY RmlC-like cupins 18 201 IPR011051 -
Pvu3g1362 208 Pfam Cupin 55 182 IPR006045 -
Pvu3g1362 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1362 Pvu-Chr3 32093599 32094587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1362 1 207 Miscellaneous Gene Families AT5G20630 69.231 2.93e-97 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1362 - - gmx:100800387 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1362 3 32093599 32094587 Pvu9g2355 9 33650737 33651892 PCT