Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2348 ATGGCGCGGTTCGCAGTGGTGTGGTGCACGGTGGCGGTGCTATTGTGCGCCGTGGCGGGTGGATCGTGGCTGGAGGATGCGAATCCGATTCGGATGGTGTCGGACGTCGAGCAGCAGGTGATTCAGGTGATAGGTCAGTGCCGGAGCGCGGTGTCGTTTGCGCGGTTCGTTGGGAGGTTCCGGAAGACGTACCGTAACGAGGAAGAGATGAAGCAGAGGTACGATATATTCTCGCAAAACCTCAGGTTCATCCGCTCCATCAACAAGAAACGTTTGTCATACACTCTCGCCGTTAATCATTTTGCTGATTGGACTTGGGAGGAGTTCAAAAGACACAGACTAGGTGCTGCTCAAAATTGCTCTGCCACTCACAAAGGCAACCACAAGCTTACAGATGCTGTTCTTCCTCCAACGAAAGACTGGAGAGAAGAAAAGATAGTCAGCTTAGTTAAAGATCAAGGCAGCTGCGGATCATGCTGGACATTCAGCACAACTGGGGCTTTAGAAGCAGCCTATGCACAGGCACATGGAAAGAGTATCTCTCTTTCTGAGCAGCAGCTAGTGGATTGTGCTGGTGATTTCAACAACTTTGGCTGTAATGGTGGGTTGCCATCCCAAGCCTTTGAGTACATTAAATACAATGGGGGGCTTGAGACAGAGGAAGCATATCCCTACACGGGAAAAGATGGTGTCTGCAAATTTTCAGCTGAAAATGTTGGGATTCAAGTCCTTGATTCTGTCAATATCACCTTGGGTGCTGAGGATGAATTAAAACATGCAGTTGCATTTGTTCGACCAGTTAGTGTGGCCTTTCAGGTGGTTAGTGGGTTCCGATTCTATGAGAAAGGAGTTTACACCAGTGACAGCTGCGGTAGCACTCCCCTGGATGTGAACCATGCTGTTCTTGCTGTTGGGTATGGAGTTGAAAATGGTGTCCCATATTGGCTCATTAAAAATTCATGGGGAGCAAACTGGGGTGACAGTGGCTACTTCAAGATGGAATTGGGGAAGAACATGTGCGGTGTTGCAACTTGTGCTTCTTATCCAATTGTGGCCTAA 1059 0.4882 MARFAVVWCTVAVLLCAVAGGSWLEDANPIRMVSDVEQQVIQVIGQCRSAVSFARFVGRFRKTYRNEEEMKQRYDIFSQNLRFIRSINKKRLSYTLAVNHFADWTWEEFKRHRLGAAQNCSATHKGNHKLTDAVLPPTKDWREEKIVSLVKDQGSCGSCWTFSTTGALEAAYAQAHGKSISLSEQQLVDCAGDFNNFGCNGGLPSQAFEYIKYNGGLETEEAYPYTGKDGVCKFSAENVGIQVLDSVNITLGAEDELKHAVAFVRPVSVAFQVVSGFRFYEKGVYTSDSCGSTPLDVNHAVLAVGYGVENGVPYWLIKNSWGANWGDSGYFKMELGKNMCGVATCASYPIVA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2348 352 SMART Inhibitor_I29_2 53 109 IPR013201 -
Pvu9g2348 352 CDD Peptidase_C1A 136 349 IPR039417 -
Pvu9g2348 352 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Pvu9g2348 352 PANTHER THIOL PROTEASE ALEURAIN 31 349 - -
Pvu9g2348 352 Pfam Papain family cysteine protease 135 350 IPR000668 GO:0006508|GO:0008234
Pvu9g2348 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Pvu9g2348 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Pvu9g2348 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Pvu9g2348 352 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Pvu9g2348 352 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Pvu9g2348 352 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Pvu9g2348 352 SMART pept_c1 135 350 IPR000668 GO:0006508|GO:0008234
Pvu9g2348 352 Gene3D Cysteine proteinases 44 351 - -
Pvu9g2348 352 SUPERFAMILY Cysteine proteinases 49 350 IPR038765 -
Pvu9g2348 352 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2348 Pvu-Chr9 33603270 33606712 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2348 K01366 - gmx:547734 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2348 9 33603270 33606712 Pvu9g2348 9 33603270 33606712 ECH
Pvu3g1354 3 32022515 32024332 Pvu9g2348 9 33603270 33606712 PCT