Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1354 ATGCAGAAAGACTGGAGAAAAGAAGGTATAGTCAGCCAAGTTAAAGATCAAGGTCACTGCGGATCTTGCTGGACATTCAGCACAACTGGTTCCTTGGAGGCAGCTTACGCACAGGCCTTTGGGAAGAATATCAGTCTCTCTGAGCAGCAGCTAGTGGATTGTGCCGGCGCTTTCAACAACTTTGGCTGTGGAGGTGGGTTGCCGTCTCAAGCATTTGAATATATTAAATACAATGGTGGCCTTGACACCGAGGAAGCATATCCCTACACCGCAGAAGATGGTGTCTGTAAATTTTCAGCTGAAAACGTTGCTGTTCGAGTCATTGACTCTGTTAATATCACTTTGGGTGCTGAGGATGAATTGAAACATGCAGTTGCTTTCGCTCGGCCAGTTAGTGTGGCATTTGAGGTGGTGGACGACTTTCGATTCTACAATAAAGGAGTTTACACTAGCAACAGTTGTGGCAGCACGCCAATGGATGTAAATCATGCCGTTCTTGCTGTTGGGTATGGAGTTGAGGATGGGGTTCCATATTGGATAATTAAAAACTCGTGGGGAAGCAGCTGGGGTGACAATGGCTACTTCAAGATGGAGTTTGGAAAGAATATGTGCGGTGTTGCAACTTGTGCATCGTATCCTGTTGTGGCTTAA 651 0.4608 MQKDWRKEGIVSQVKDQGHCGSCWTFSTTGSLEAAYAQAFGKNISLSEQQLVDCAGAFNNFGCGGGLPSQAFEYIKYNGGLDTEEAYPYTAEDGVCKFSAENVAVRVIDSVNITLGAEDELKHAVAFARPVSVAFEVVDDFRFYNKGVYTSNSCGSTPMDVNHAVLAVGYGVEDGVPYWIIKNSWGSSWGDNGYFKMEFGKNMCGVATCASYPVVA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1354 216 CDD Peptidase_C1A 4 213 IPR039417 -
Pvu3g1354 216 Pfam Papain family cysteine protease 3 214 IPR000668 GO:0006508|GO:0008234
Pvu3g1354 216 PRINTS Papain cysteine protease (C1) family signature 17 32 IPR000668 GO:0006508|GO:0008234
Pvu3g1354 216 PRINTS Papain cysteine protease (C1) family signature 163 173 IPR000668 GO:0006508|GO:0008234
Pvu3g1354 216 PRINTS Papain cysteine protease (C1) family signature 178 184 IPR000668 GO:0006508|GO:0008234
Pvu3g1354 216 SUPERFAMILY Cysteine proteinases 3 214 IPR038765 -
Pvu3g1354 216 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 161 171 IPR025660 -
Pvu3g1354 216 PANTHER THIOL PROTEASE ALEURAIN 2 213 - -
Pvu3g1354 216 SMART pept_c1 2 214 IPR000668 GO:0006508|GO:0008234
Pvu3g1354 216 Gene3D Cysteine proteinases 2 215 - -
Pvu3g1354 216 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 178 197 IPR025661 -
Pvu3g1354 216 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 17 28 IPR000169 -
Pvu3g1354 216 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 2 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1354 Pvu-Chr3 32022515 32024332 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1354 K01366 - gmx:100787165 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1354 3 32022515 32024332 Pvu9g2348 9 33603270 33606712 PCT