Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2260 ATGGTTTCAATGTCCCTTTGTCTTTCTTCTTCCATTATTCCTTCTCCCATTCCCCATTCCAAATTTCCCACAACCCAAGATCCGTTTTTTCGGGTCACCCGCTTCTCGGTTCCTGCTGCATCAAAAACCAGTGTCTCTGGCTATTCTACCAGAAAACCAGCTCCAAAAACCAAAACCAGAAACCCAAAAGATAAGGAATTTTCCCAAACACTGTTCTTTGAGGGTATGGAGGAGACACCCATCAAGAAGAAGAAGAAGAAAAAGAAGGAGAAAAGGAAGAGTGATAAGTTCTGGGTACACACTCTCCCTGAAGTCTTGAACTATCACATTCATAAGAAGGACTGGGTTATTGCCCTTGAGTTATTTGACATGCTTAGAGGCCAACCCTATTACCAACCCAGACAAGATACTTACATGAAACTCATTGTGTTGCTTGGAAAATCTGGCCAACCCCATCGTGCCAATGAGCTTTTTAACTCTATACATGAAGATGGTTGCCAAAGTACTGAACTTTACACGGCCTTAATTATAGCTTATTGTCGAAATAATTTGGTTGATGAGGCATTGTCGATTCTTGATGAGATGATGAACATCCCCGATTGCCAGCCTGATATTTTAACTTACAGTACCTTGATGAAAGCTCTTGTGGATGCTTTGAAGTTTGAAATGGTTGAGTTGGTGTATGATAAAATGGTAGAAAGATCTATCATGCCAACCACTCTCACCCAGAACCTCCTCCTGAGTGGTTTAGGTAAGGCCGGGAGGTTTGATGAGATGGAGAAAATAGTGTCAAGTATGCTGGAGAGCACTACCTGCAAGCCTGATGTTTGGACAATGAACGCGGTCATCGGCATCTTTCGTGATGAGGGTCAGATCGAGATGATGGAGAAATGGTATGAGAAATTTTGTAGTTTTGGGATACAGCCACAAAGGAGCACTTTCAACATTTTAATGGGAGCTTATAGTAAAAATAGAATGTATGAGAAAATGTCATCAGTGATGCAGTGTATGCACAAGGAAAAATGTCCATGGACAACCCCAACTTACAACTTCGTGATTGAGGCGTTTGCAGATGCAGGTGATGCTGCAAACATGGAACGTGCATTTGATCAAATGGCTGCTGAGGGTTTGAAAGCAGATACCAAGACTATCTGCTGCCTTATCAATGGCTATGCCAAGGCAGGAATCTTCTATAAAGTAATGAGTAGTGTTGTTTTGGCTAAGAAGCTTCAGATACATATGAATACTTCATTGTACAATGCAGTTATATCTGCCTGTGCCAAGGAGGATTCTTTGATTGAAATGGAAAGATTTTTCAATCGTATGAAAGAAAAAGAATGTCAACCAGATGAAACAACATACTCTGTCATGATTGAAGCATACAGAAAAGCAAATATGAACGATAAAATACACTATTTGGAGCAAGAAAAACAGATGATGATATCTGATGAGAAAAGTTTGAATGAGCCTCAGGAGACAATCTTTGATTGA 1491 0.4044 MVSMSLCLSSSIIPSPIPHSKFPTTQDPFFRVTRFSVPAASKTSVSGYSTRKPAPKTKTRNPKDKEFSQTLFFEGMEETPIKKKKKKKKEKRKSDKFWVHTLPEVLNYHIHKKDWVIALELFDMLRGQPYYQPRQDTYMKLIVLLGKSGQPHRANELFNSIHEDGCQSTELYTALIIAYCRNNLVDEALSILDEMMNIPDCQPDILTYSTLMKALVDALKFEMVELVYDKMVERSIMPTTLTQNLLLSGLGKAGRFDEMEKIVSSMLESTTCKPDVWTMNAVIGIFRDEGQIEMMEKWYEKFCSFGIQPQRSTFNILMGAYSKNRMYEKMSSVMQCMHKEKCPWTTPTYNFVIEAFADAGDAANMERAFDQMAAEGLKADTKTICCLINGYAKAGIFYKVMSSVVLAKKLQIHMNTSLYNAVISACAKEDSLIEMERFFNRMKEKECQPDETTYSVMIEAYRKANMNDKIHYLEQEKQMMISDEKSLNEPQETIFD* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2260 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 203 IPR002885 -
Pvu9g2260 496 MobiDBLite consensus disorder prediction 41 65 - -
Pvu9g2260 496 MobiDBLite consensus disorder prediction 41 55 - -
Pvu9g2260 496 Gene3D Tetratricopeptide repeat domain 99 269 IPR011990 GO:0005515
Pvu9g2260 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Pvu9g2260 496 Pfam PPR repeat family 171 216 IPR002885 -
Pvu9g2260 496 Pfam PPR repeat family 415 461 IPR002885 -
Pvu9g2260 496 PANTHER ATPASE EXPRESSION PROTEIN 3 1 485 - -
Pvu9g2260 496 Pfam PPR repeat 244 269 IPR002885 -
Pvu9g2260 496 Pfam PPR repeat 137 166 IPR002885 -
Pvu9g2260 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Pvu9g2260 496 PANTHER OS03G0309800 PROTEIN 1 485 - -
Pvu9g2260 496 TIGRFAM PPR: pentatricopeptide repeat domain 313 345 IPR002885 -
Pvu9g2260 496 TIGRFAM PPR: pentatricopeptide repeat domain 242 276 IPR002885 -
Pvu9g2260 496 TIGRFAM PPR: pentatricopeptide repeat domain 137 167 IPR002885 -
Pvu9g2260 496 TIGRFAM PPR: pentatricopeptide repeat domain 418 451 IPR002885 -
Pvu9g2260 496 TIGRFAM PPR: pentatricopeptide repeat domain 207 239 IPR002885 -
Pvu9g2260 496 TIGRFAM PPR: pentatricopeptide repeat domain 171 197 IPR002885 -
Pvu9g2260 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Pvu9g2260 496 Pfam Pentatricopeptide repeat domain 306 357 IPR002885 -
Pvu9g2260 496 Gene3D Tetratricopeptide repeat domain 401 480 IPR011990 GO:0005515
Pvu9g2260 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Pvu9g2260 496 Gene3D Tetratricopeptide repeat domain 270 400 IPR011990 GO:0005515
Pvu9g2260 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2260 Pvu-Chr9 32511402 32514123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2260 132 476 Glycosyltransferase AT1G05670 22.857 4.12e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2260 - - gmx:100776657 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2260 9 32511402 32514123 Pvu9g2260 9 32511402 32514123 ECH
Pvu3g1250 3 29953332 29956082 Pvu9g2260 9 32511402 32514123 PCT