Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1250 ATGGCTTCCCTATCTCTCTCCTTTTCATCTTCCATTGTTCCCTCTCGAATTCCCCACCACAATTCTAACAGAACCCATACTCAACACTCCACTTTTAGGGTTACCTGCTTCGCCATTTCCTCTCCCCCTTCCAAACCCGTTGTCAAAAAGCGACACTGGAAAAAAGGTGAGTTTCCTGGTACTTCGGAAACATTGTTACACGATAGTACGAGGAGGACCCCCATCAAGAATATCAAGCAGAAGTTGGAGAAAAAGAACAGTGCGAAGGCATGGGTCAACACTGTCACCGAATCCTTATCTGAACAAATCGACAAGAAGCAGTGGCTTCAAGCCCTTCAGGTATTTGATATGCTTAGAGAACAAACCTTCTACAGACCCAAAGAAGGGGCTTACATGAAACTTATTGTGCTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCACCAACTTTTCACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTCATCTGTACACAGCATTGCTTGCTGCGTATTGCAGGAGCAACCTTATTGATGAAGCTTTTTCAATTCTTAATGAGATGAAGAAACTTCCTCTTTGCCAGCCTGATGTTTTCACTTACAGTACCTTGATCAAAGTTTGTGTGGATGCTTTCAAATTTGATTTGGTTGAGTTATTGTATGAAGAAATGGCTGAAAGGTCCGTCACGCCAAACACAGTGACTCAAAATATTGTTTTGGGTGGTTATGGTAAGGCGGGGAAGTTTGATCAGATGGAGAAAGTGCTTTCCAGCATGCTGGAGAGCACTACCTGCAAGCCGGATGTTTGGACAATGAACACGATCATCAGTGTCTTTGGTAACATTGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGAAATTTTGGGATAGAACCTGAAACGCGCACTTTTAATATTTTGATTGGCGCCTATGGGAAGAAGAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGAAGGTTGCAATTTCCATGGACAACCTCGACTTTTAACAATGTGATTGAGGCATTTGCAGATGCAGGTGACGTGAGGCACATGGAGTGTACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGCTGCCTTATCAAAGGTTATGCAAATGCCGGTCTCTTTCATAAAGTAATTAGCAGTGTTCACTTGGCTGGAAAGTTTGAGATACCTCAAAATATTGCCTTTTATAACGCAGTCTTATCTGCATGTGCAAAGGCAGAGGATTTGATGGAAATGGAAAGAGTTTATAAGCGTATGAAAGATAACCAATGTCAACCAGACGAAACAACATACATGATCATGATTGAAGCATATAAAAAAGACAATATGAATGACAAAATATACTATTTGGAGCAGGAAAAGCAGACAATGATAACTGACAACAAAAAAGTGAGCCGTTCCGAGGATGATATCTTTAGTTCAGACAGTTAA 1482 0.4123 MASLSLSFSSSIVPSRIPHHNSNRTHTQHSTFRVTCFAISSPPSKPVVKKRHWKKGEFPGTSETLLHDSTRRTPIKNIKQKLEKKNSAKAWVNTVTESLSEQIDKKQWLQALQVFDMLREQTFYRPKEGAYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPHLYTALLAAYCRSNLIDEAFSILNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSVTPNTVTQNIVLGGYGKAGKFDQMEKVLSSMLESTTCKPDVWTMNTIISVFGNIGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRRLQFPWTTSTFNNVIEAFADAGDVRHMECTFDQMRAEGMKADTKTFCCLIKGYANAGLFHKVISSVHLAGKFEIPQNIAFYNAVLSACAKAEDLMEMERVYKRMKDNQCQPDETTYMIMIEAYKKDNMNDKIYYLEQEKQTMITDNKKVSRSEDDIFSSDS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1250 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 268 IPR002885 -
Pvu3g1250 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Pvu3g1250 493 PANTHER OS03G0309800 PROTEIN 1 480 - -
Pvu3g1250 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Pvu3g1250 493 Gene3D Tetratricopeptide repeat domain 334 397 IPR011990 GO:0005515
Pvu3g1250 493 Gene3D Tetratricopeptide repeat domain 398 474 IPR011990 GO:0005515
Pvu3g1250 493 Gene3D Tetratricopeptide repeat domain 263 333 IPR011990 GO:0005515
Pvu3g1250 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Pvu3g1250 493 Gene3D Tetratricopeptide repeat domain 92 262 IPR011990 GO:0005515
Pvu3g1250 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Pvu3g1250 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Pvu3g1250 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Pvu3g1250 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Pvu3g1250 493 PANTHER ATPASE EXPRESSION PROTEIN 3 1 480 - -
Pvu3g1250 493 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Pvu3g1250 493 TIGRFAM PPR: pentatricopeptide repeat domain 131 162 IPR002885 -
Pvu3g1250 493 TIGRFAM PPR: pentatricopeptide repeat domain 272 303 IPR002885 -
Pvu3g1250 493 TIGRFAM PPR: pentatricopeptide repeat domain 165 192 IPR002885 -
Pvu3g1250 493 TIGRFAM PPR: pentatricopeptide repeat domain 235 270 IPR002885 -
Pvu3g1250 493 TIGRFAM PPR: pentatricopeptide repeat domain 307 335 IPR002885 -
Pvu3g1250 493 TIGRFAM PPR: pentatricopeptide repeat domain 342 374 IPR002885 -
Pvu3g1250 493 TIGRFAM PPR: pentatricopeptide repeat domain 413 445 IPR002885 -
Pvu3g1250 493 Pfam PPR repeat 238 263 IPR002885 -
Pvu3g1250 493 Pfam PPR repeat 131 159 IPR002885 -
Pvu3g1250 493 Pfam PPR repeat family 268 315 IPR002885 -
Pvu3g1250 493 Pfam PPR repeat family 409 455 IPR002885 -
Pvu3g1250 493 Pfam PPR repeat family 165 209 IPR002885 -
Pvu3g1250 493 Pfam PPR repeat family 340 387 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1250 Pvu-Chr3 29953332 29956082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1250 125 470 Glycosyltransferase AT1G05670 23.580 6.68e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1250 - - gmx:100813729 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1250 3 29953332 29956082 Pvu3g1250 3 29953332 29956082 ECH
Pvu3g1250 3 29953332 29956082 Pvu9g2260 9 32511402 32514123 PCT