Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2105 ATGTCCAAGCTCCTTCTTCTACCCTCTCTTCCCCTCACTCCCTCCCCTCACCGTTATCACACTCTTTCTTCCGCTTCCACCCTTCAATTTCAATGCCGATTCCCCTTCCACTCCCACGCGCGCACGACATACCCTTCCCTTCGCGCTTTGGATTCCTCTTCCGACGCCATAACCAACGAAGAATTGAAAGAAGTGCCAACAGAAGAGGGCGTTCTAGATCAGAGTGTTGGGATTACGGACGAGGATTATCCAAGTGGCGAGTTCGATTTCAAACCGGTTACCGGATGGAGCAGCTTCCTCGTTAAGCTTAAGATGCTGGTTGCGTTCCCTTGGGAGCGTGTGCGCAAGGGCAGCGTTCTCACAATGAAGCTTCGTGGCCAGATATCTGATCAAGTGAAGAGTAGGTTCTCTCCGGGACTTTCTTTGCCTCAAATTTGTGAGAACTTTTTGAAAGCAGCATATGATCCTCGTGTTTCTGGGATCTATCTTCATATTGATAGTTTAAATTGCGGGTGGGGTAAAGTAGAAGAAATTCGAAGGCATATATTGGATTTCAAAAAATCAGGAAAATTTATTCTGGCTTATGTGCCTTTATGTCAAGAAAAAGAGTATTACCTTGCATGTGCATGTGACGAGATATACTCTCCACCCAGTGCTTACTTTTCTTTGTTTGGATTGACTGTTCAAGCCTCATTCCTTAGAGGTATTTTGGATAACATAGGAATTGAACCGCAAGTGGAAAGAATTGGAAAATATAAAAGTGCAGGTGATCAACTAGCTCGAAGAACCATGTCTGAGGAAAATTGTGAGATGCTGACTGCATTGCTTGATAATATCTATACAAATTGGCTGGATAAAGTCTCTTCTTCCAAAGGAAAAAGTAGAGAAGATATTGAGAAACTCATAAATGAAGGTGTTTATCAAGTTGACAAGCTGAAAGAAGAGGGACTCATATCAAATGTAATCTATGATGACGAGATTATCACCATGTTGAAGGAGAGACTTGGAGTGAAACTTGATAAAGATCTGCCTATGGTGGACTACAGGAAATACTCTCGAGTTAGGAAATGGACTGTTGGAATATCAGGTGGTAGAGAACTTATAGCCATTATCCGAGCATCAGGGAGCATTAGTCGTGTAGAGAGTCAATTAAGTGTCTCTAGCTCAGGCATCACTGCGGAGAAGTTTATTGAAAAGATTCGAACTGTCAGAGAGTCAAAAAAATTTAAGGCTGCTATCATTAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCCGGCTTTTGGCTGCCAAAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGCGGAGGGTACTACATGGCAATGGGAGCTGATGCTATTGTTGCAGAAAGCCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTGGGGAAACTGTATGAGAAGATTGGCTTTAACAAAGAAGTTATATCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAACAACGTCCTTTCAGACCAGATGAAGCAGAGTTATTTGCCAAATCAGCCAGGCATGCTTATAAACAATTTCGGGACAAGGCTGCTTTGTCCAGATCAATGACAGTAGAAAAGATGGAGGAGGTTGCACAGGGAAGGGTTTGGACTGGTAATGATGCAGCATCGCATGGTTTAGTTGATGCTATTGGCGGGCTTTCTCGTGCTATTGCCATAGCAAAAGTCAAGGCCAATATACCTCAAGACAGTCAGGTTACACTTGTGGAGATCTCCAGATCCAGCCCTTCTCTACCCGAGCTCTTGTTAGGTGTAGGGAGTTCCCTCGTTGGAGCTGACAGAATGGTGAAGGAACTGCTACAGGGCATGACATTTTCTGATGGAGTTCAAGCCCGGATGGATGGAATCATGTTTCAGACATTGGAAGAATATCCTTTTGGGAATCCCATTTTGTCAATAATAAAAGATTACCTCAGTTCCCTGTAG 2007 0.4355 MSKLLLLPSLPLTPSPHRYHTLSSASTLQFQCRFPFHSHARTTYPSLRALDSSSDAITNEELKEVPTEEGVLDQSVGITDEDYPSGEFDFKPVTGWSSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRVSGIYLHIDSLNCGWGKVEEIRRHILDFKKSGKFILAYVPLCQEKEYYLACACDEIYSPPSAYFSLFGLTVQASFLRGILDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTALLDNIYTNWLDKVSSSKGKSREDIEKLINEGVYQVDKLKEEGLISNVIYDDEIITMLKERLGVKLDKDLPMVDYRKYSRVRKWTVGISGGRELIAIIRASGSISRVESQLSVSSSGITAEKFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAAKKPVIASMSDVAASGGYYMAMGADAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEVISRGRYAELLAAEQRPFRPDEAELFAKSARHAYKQFRDKAALSRSMTVEKMEEVAQGRVWTGNDAASHGLVDAIGGLSRAIAIAKVKANIPQDSQVTLVEISRSSPSLPELLLGVGSSLVGADRMVKELLQGMTFSDGVQARMDGIMFQTLEEYPFGNPILSIIKDYLSSL* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2105 668 PIRSF Protease_4_SppA 59 667 IPR004634 GO:0006465|GO:0008233|GO:0016021
Pvu9g2105 668 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 368 582 IPR004635 GO:0006508|GO:0008233
Pvu9g2105 668 Gene3D - 364 512 - -
Pvu9g2105 668 Gene3D - 261 353 - -
Pvu9g2105 668 Gene3D - 117 260 - -
Pvu9g2105 668 SUPERFAMILY ClpP/crotonase 109 326 IPR029045 -
Pvu9g2105 668 Gene3D - 513 638 - -
Pvu9g2105 668 Pfam Peptidase family S49 436 586 IPR002142 GO:0006508|GO:0008233
Pvu9g2105 668 Pfam Peptidase family S49 185 337 IPR002142 GO:0006508|GO:0008233
Pvu9g2105 668 CDD S49_SppA_67K_type 120 333 - -
Pvu9g2105 668 PANTHER PROTEASE 4 35 667 - -
Pvu9g2105 668 SUPERFAMILY ClpP/crotonase 368 573 IPR029045 -
Pvu9g2105 668 CDD S49_Sppa_N_C 368 582 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2105 Pvu-Chr9 30165222 30179554 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2105 K04773 - gmx:100781522 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1875 3 39291342 39300409 Pvu9g2105 9 30165222 30179554 PCT