Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1875 CATTACTTTCCCAGACAAACAGGCAAATTTGCTGGCTTCTTTTTTCCCTCACTTTTTGCCGCAGTGAAGCGGCAAAGTGTCACGGAAATGTCACGCGGTCGCATTGCCGTCCACCGCTTGCGCTATGCCTACGCCGCATCATCGTCAATCACCGCATCCTCATCTGCTGTTACACGCTTTCAGTTCCAATGTCCTCAACAATATCTCACGCGCGCATCCCTCCCCTTCCACTTCCACTCTCGTTATTCTTCGTCTGTCCCCAAACAAGCCTTACACGGTGGCGTCGAGAATTATCCGAGTGGAGACTTTGATTTCAAGCCCCTCGCTGGCTGGAAAAAATTCATCGTCAAGCTCAAGATGCTAACGGCCTTACCCTGGCACCGGCTCCGATACGGCACCGTTTTGACAATCAAGTTGCGCGGCCAGATATCGGATCAGCTCAAGAGTAGGTTCTCTCGGGGATTATCTCTGCCTCAAATCTGTGATAATTTCTTGAAGGCAGCCTATGATCCTCGAATTTCCGGTATCTATCTCCACATTGATATTTTAAATTGCGGCTGGGCCAAGGTTGAAGAAATTCGAAGGCACATCTTCAATTTCAGAAAATCAGGAAAATTTATTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATATTATATTGCAAGTGCGTGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCTTTGTTTGGATTGACTGTTCAAGCTCCATTCTTCAGAGGTGTTTTGGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGCAAGTACAAAAGTGTAGGAGATCAACTTACCCGTAGGACCATGTCTGAAGATCATCATGAGATGCTTACTGCATTGCTTGACAATATCTATACACATTGGCTGGACAATGTCTCTGCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATAAAGGTGTTTATCAAGTAGAGACACTTAAAGAAGAGGGCTTCATATCAGACATAATCTATGATGACGAGGTTATCACTAGGTTGAAGGAGAGACTTCAAGGAAAAACAAAGAAAAATCTGCCTATGGTTGATTACAGAAAATACTCTGGAGTTAGGAAATCAACTCTTGGACTATCAGATGGTAAAGACTTAATAGCCGTCATCCGAGCTTCGGGGAGTATTCGTCGTATTGAGAGTCCACTAGGTGCCCGTAGCTCAGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAGTATACGAGAGTCAAATAAATACAAGGCTGCAATTATCCGAATTGACAGTCCAGGAGGGGATGCCCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTTGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAATCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAGCTTAACCTTGGGAAACTCTATGAGAAGATTGGCTTCAACAAAGAAATTATATCAAGGGGTAGATATGCTGAGCTGCGAGCAGCTGAACAGCGTTCGTTTAGACCAGATGAAGCAGAGCTATTTTCCAGGTCTGCTCAGCATGCTTATAAACAATTTCGAGATAAAGCAGCCTTTTCTCGATCTATGACTGTAGACAAGATGGAAGAGGTTGCGCAGGGGAGGGTTTGGACTGGCAAGGATGCAGCTTCTCATGGTTTGATTGATGCTATTGGTGGACTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCGGTATACCTCAAGATAGACAGGTTACTGTTGTGGAGCTCTCAAGACCCAGCCCTTCTCTACCCGAGATTTTGAGTGGTCTAGGTAATTCTCTCGTTGGAGTTGACAGAACTTTAAACGAATTACTAGAGGACTTGACATTTTCTCATGGAGTCCAAGCACGGATGGACGGAATCATGTTTGAGAAATTGGAAGGATATCCATACGCCAATCCTATTTTGGCATTGATAAAAGATTATCTCAGTTCCCTTTAG 2052 0.4396 HYFPRQTGKFAGFFFPSLFAAVKRQSVTEMSRGRIAVHRLRYAYAASSSITASSSAVTRFQFQCPQQYLTRASLPFHFHSRYSSSVPKQALHGGVENYPSGDFDFKPLAGWKKFIVKLKMLTALPWHRLRYGTVLTIKLRGQISDQLKSRFSRGLSLPQICDNFLKAAYDPRISGIYLHIDILNCGWAKVEEIRRHIFNFRKSGKFIVAYVPSCREKEYYIASACEEIYAPPSAYFSLFGLTVQAPFFRGVLENLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTALLDNIYTHWLDNVSAARGKKREDIENFINKGVYQVETLKEEGFISDIIYDDEVITRLKERLQGKTKKNLPMVDYRKYSGVRKSTLGLSDGKDLIAVIRASGSIRRIESPLGARSSGIIGEKLIEKIRSIRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAENLTLTGSIGVVTGKLNLGKLYEKIGFNKEIISRGRYAELRAAEQRSFRPDEAELFSRSAQHAYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASHGLIDAIGGLSRAVAIAKLKAGIPQDRQVTVVELSRPSPSLPEILSGLGNSLVGVDRTLNELLEDLTFSHGVQARMDGIMFEKLEGYPYANPILALIKDYLSSL* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1875 683 SUPERFAMILY ClpP/crotonase 125 341 IPR029045 -
Pvu3g1875 683 PIRSF Protease_4_SppA 72 683 IPR004634 GO:0006465|GO:0008233|GO:0016021
Pvu3g1875 683 CDD S49_SppA_67K_type 135 348 - -
Pvu3g1875 683 PANTHER PROTEASE 4 70 682 - -
Pvu3g1875 683 Gene3D - 133 271 - -
Pvu3g1875 683 Gene3D - 272 368 - -
Pvu3g1875 683 CDD S49_Sppa_N_C 383 597 IPR002142 GO:0006508|GO:0008233
Pvu3g1875 683 SUPERFAMILY ClpP/crotonase 383 588 IPR029045 -
Pvu3g1875 683 Pfam Peptidase family S49 451 601 IPR002142 GO:0006508|GO:0008233
Pvu3g1875 683 Pfam Peptidase family S49 200 349 IPR002142 GO:0006508|GO:0008233
Pvu3g1875 683 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 383 597 IPR004635 GO:0006508|GO:0008233
Pvu3g1875 683 Gene3D - 377 527 - -
Pvu3g1875 683 Gene3D - 528 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1875 Pvu-Chr3 39291342 39300409 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1875 K04773 - gmx:100809623 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1875 3 39291342 39300409 Pvu3g1875 3 39291342 39300409 ECH
Pvu3g1875 3 39291342 39300409 Pvu9g2105 9 30165222 30179554 PCT