Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1953 ATGTTGGAGGGTCCAACCTTTCTTGTTTCGAGGGACTTACCGAGCTCATGTGAGCAAGAGACCAGGTGGATTTACAATTCCTTCTGTGTGATGCAGCTCTCAAACAACAAGCGTCGTTTGGAGCTAGAGAAAGAAGCTGTGCTGAGAAAGTCATGCAAGCTTTCAGATGCTCCTGAGGACGGGGAAGGGAAAACAAAGAAAAACATCCAAGATCTTTCCCTATCCGTTAACCAAGCAAATGAACAAAATCATGCAAGTGACCAGTCAGATTCAAGTTCGCTTATCTACCAACTTGGTCGGGACATCTCAATTAATTGTCTCCTACGATGCTCCAGGTCTGACTATGGTTCGATTGCCTCATTGAACCAAAGTTTTCGATCTCTCATCCGGACTGGAGAGCTTTATAGGCTGAGGCGGCAGATGGGTATCATAGAGCATTGGGTTTACTTCTCTTGTAATCTTCCTGAATGGGAGGCATTTGATCCAAACACTGGTAGATGGATGCGTTTGCCTAGAATGCCTTCTAATGAATGCTTTATCTGTTCAGATAAGGAGTCATTGGCTGTTGGTACAGAGCTTCTTGTTTTTGGAAAGGAGATAATGTCTCCTGTCATATACAGATATAGCATTTTGATGAACTCATGGTCATCAGGTATGGAAATGAATGTTCCTAGATGCTTGTTTGGTTCTGCCAGCCTTGGAGAAGTTGCCATATTAGCTGGCGGCTGTGATCCTCGTGGCAATATTTTGAGTTCTGCAGAGCTTTATAACTCAGAAACTGGAACGTGGGAGCTTCTACCAAACATGAATAAAGCTAGGAAAATGTGTTCTGGTGTATTTATATATGGGAAATTTTATGTCATTGGCGGTATTGGAGTAGGTAACTCACGGCAGTTAACATGTGGTGAAGAGTTTGATCTGCAGACGAGAAAGTGGAGAGAAATACCCAACATGTTCCCTGGGCGAAATGGAGGATCTGAGGTGACTGAAGTATCGGCTGCTGCTGAAGCACCTCCGTTGGTTGCAGTTGTAAATAATGTATTGTATTCTGCAGATTATGCCCTACAAGAGGTAAGGAGATATGATAAAGACAATAATTCATGGGTCACTATTGGAAGATTACCTGACCGAATAGTCTCAATGAATGGCTGGGGATTAGCCTTTCGTGCATGTGGAAATCGTCTAATTGTTATTGGTGGGCCAAGAGCTTTAGATGGAAGGGTAATTGAGATCAATGCATGTGTCCCAGGTGAAGGTGTGCCAGAGTGGAACCTGCTTGCTAGTCGGCAGTCAGGAAGCTTTGTGTATAACTGTGCAGTGATGGGATGCTGA 1332 0.4384 MLEGPTFLVSRDLPSSCEQETRWIYNSFCVMQLSNNKRRLELEKEAVLRKSCKLSDAPEDGEGKTKKNIQDLSLSVNQANEQNHASDQSDSSSLIYQLGRDISINCLLRCSRSDYGSIASLNQSFRSLIRTGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNTGRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMEMNVPRCLFGSASLGEVAILAGGCDPRGNILSSAELYNSETGTWELLPNMNKARKMCSGVFIYGKFYVIGGIGVGNSRQLTCGEEFDLQTRKWREIPNMFPGRNGGSEVTEVSAAAEAPPLVAVVNNVLYSADYALQEVRRYDKDNNSWVTIGRLPDRIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEINACVPGEGVPEWNLLASRQSGSFVYNCAVMGC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1953 443 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 443 - -
Pvu9g1953 443 Gene3D - 137 415 IPR015915 GO:0005515
Pvu9g1953 443 SUPERFAMILY Kelch motif 152 439 IPR015915 GO:0005515
Pvu9g1953 443 Coils Coil 30 50 - -
Pvu9g1953 443 Pfam Kelch motif 224 270 IPR006652 GO:0005515
Pvu9g1953 443 Pfam Kelch motif 272 318 IPR006652 GO:0005515
Pvu9g1953 443 SMART kelc_smart 284 333 IPR006652 GO:0005515
Pvu9g1953 443 SMART kelc_smart 236 283 IPR006652 GO:0005515
Pvu9g1953 443 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1953 Pvu-Chr9 28018750 28021394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1953 92 336 EF-hand Containing Proteins AT4G39560 26.908 1.51e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1953 - - gmx:100813260 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1977 3 40366712 40369284 Pvu9g1953 9 28018750 28021394 ECH
Pvu9g1953 9 28018750 28021394 Pvu9g1953 9 28018750 28021394 ECH