Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1977 ATGGCAAACTCAAGTGAAGAGGAGAACCAACGGGCTTGTGATACTTTACGCTCGATCGATGTCTCAAAGAATAAGGGCTCGCAGGAAGGGGATGAAAAAGAAGCTACACCAGAAAAGCTGTCCAAACTTTCAGATGAGCCCAAAGAGGTGGGTATGAGGACGGTTATGGCTTTTCTTATCCTTCCCCAGGACCAAGAGAATGAGCAAATCCATGAAGCTGAGATTTCTGACGATATCCTACGTATTGGCAAACTCTACAGGGATCTCTCTATCAATGTTCTCCAAAAAGTGTCAAGGTCTGATTATGGCTTAATTGCTACATTGAACAGTAGTTTTCGATCTCTGATTCGGAGTGGAGAACTGTATAAGCGGAGGCAGGAAATGGGTGTTGTAGAGCATTGGATTTACTTTTCTTGCAATCTCGGTCAATGGGAAGGATATGATCCAAACCGTGGGCGTTGGATGAAGATGCCAAAAATGCCTCGTGATGACTGCTTTATGTACTCGGATAAGGAGTCGTTGGGTGTTGGTACTGATATTCTTGTTTTTGGAAGGGCGATAACGGCTCCAGTGGTTTATGGATACAGCCTTTTGACCAACACCTGGTCATCTTCTGTAGAAATGAACATTCCCAGATGCTTGTTTGCATCTGCAAGCATTGGAGGAATTGCCATAGTGGCTGGTGGTGTTGATCCACGTGGCAAGGTCTTGAGCGTAGCTGAGCTTTATAACTCAGAAACCAGAAAGTGGGAAACTCTTCCAAACATGCATACAGAAAGGAGGATGTCTGCTGGTTTTTTCATGGATGGGAAATTTTATGTGATTGGTGGAATTGCAGAAGACAACAAAACAGAGATAAGAAGCGGTGAGGAGTATGATTTGGAGACCAAAACATGGCGTACAATACCCGACATGTTTCCTTCGCGAGGTGAAGAAGCCTATATGGACTCTCCTCCTTTGGTTGCAGTTGTTGATAATGTATTGTATTCTGCAGATTTTAAAGAGCACATAATAAGGAGATATGTGAAAGAGACTAACAAATGGGTAACCATTGGAAGTCTTCCTGAGAAAACATCCTCTATGGGTGGATGGGGAATAGGATTTCGGGCATGTGGAAATCGGATCATGGTTATTGGTGGGCTTAGCTCTGTGAGTGGAGGTATTACTGAAATTAATTCTTGGATCCCAGCTGAAGGTGCACTGCAGTGGAACCTGCTTGCAAGAAGGAGGATAGGGAGCTTTGTGATTAATTGCGCAGTGATGGGATGCTGA 1272 0.441 MANSSEEENQRACDTLRSIDVSKNKGSQEGDEKEATPEKLSKLSDEPKEVGMRTVMAFLILPQDQENEQIHEAEISDDILRIGKLYRDLSINVLQKVSRSDYGLIATLNSSFRSLIRSGELYKRRQEMGVVEHWIYFSCNLGQWEGYDPNRGRWMKMPKMPRDDCFMYSDKESLGVGTDILVFGRAITAPVVYGYSLLTNTWSSSVEMNIPRCLFASASIGGIAIVAGGVDPRGKVLSVAELYNSETRKWETLPNMHTERRMSAGFFMDGKFYVIGGIAEDNKTEIRSGEEYDLETKTWRTIPDMFPSRGEEAYMDSPPLVAVVDNVLYSADFKEHIIRRYVKETNKWVTIGSLPEKTSSMGGWGIGFRACGNRIMVIGGLSSVSGGITEINSWIPAEGALQWNLLARRRIGSFVINCAVMGC* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1977 423 Gene3D - 120 420 IPR015915 GO:0005515
Pvu3g1977 423 MobiDBLite consensus disorder prediction 1 46 - -
Pvu3g1977 423 MobiDBLite consensus disorder prediction 24 46 - -
Pvu3g1977 423 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 36 423 - -
Pvu3g1977 423 SUPERFAMILY Kelch motif 140 420 IPR015915 GO:0005515
Pvu3g1977 423 SMART kelc_smart 271 326 IPR006652 GO:0005515
Pvu3g1977 423 SMART kelc_smart 223 270 IPR006652 GO:0005515
Pvu3g1977 423 SMART kelc_smart 179 222 IPR006652 GO:0005515
Pvu3g1977 423 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 36 423 - -
Pvu3g1977 423 MobiDBLite consensus disorder prediction 1 23 - -
Pvu3g1977 423 Pfam Kelch motif 211 256 IPR006652 GO:0005515
Pvu3g1977 423 Pfam Kelch motif 267 305 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1977 Pvu-Chr3 40366712 40369284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1977 81 302 EF-hand Containing Proteins AT4G39560 26.609 3.05e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1977 - - pvu:PHAVU_003G191300g 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1977 3 40366712 40369284 Pvu9g1953 9 28018750 28021394 ECH
Pvu3g1977 3 40366712 40369284 Pvu3g1977 3 40366712 40369284 ECH
Pvu2g0910 2 14119321 14122269 Pvu3g1977 3 40366712 40369284 PCT