Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1942 ATGGTGGCCGACAGGACCAAGAAATTGAAGGTTTCCGACAAGGGCGAGAACCTCGACGAAATTGACGGAGAACTCGTCCTTTCCATTGAGAAGTTGCAGGAGATCCAAGACGAGCTCGAAAAGATCAATGAAGAGGCCAGCGACAAAGTTCTCGAGATAGAGCAGAAGTACAATGAGATTAGGAAGCCCGTTTATGACAAGCGCAATGATATTATCAAGTCAATTCCTGATTTTTGGTTAACTGCTTTTTTGAGTCATCCTGCACTTGGTGATCTTTTGAACGAAGAAGATCAGAAGATATTTAAGTATTTGAGTTCTCTTGAGGTTGAAGATTTTAAAGATGTCAAATCAGGATACTCAATCACCTTTAATTTCAACGCCAATCCCTATTTTGAAGATTCAAAACTTGTAAAGACTTATACTTTCCTTGAGGAAGGAACAACAAAAGTCACTGCCACTCCCATAAAGTGGAAGGAGGGCAAGAGCATACCCAATGGCGTTAGTCATGAGAAAAAAGGGAACAAGCGGGCTTCTATTGATATCAGCTTCTTTAGTTGGTTTAACGACACTGAGCAAAAAGATGAAATTGATGACATCCATGATGAGCAGGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTTACTTATTTCAACAACGAAGAACCTGATGAGGACGAGGTTGATGAGGATGAAGCTGATGATGAGGGAAAGGATGACGGTGACTCTGAAGATGATGATGATGAAGGTGAGGAGGATGACGATGAGGGGGAGGAGGATGATGGCAAGTGA 798 0.4173 MVADRTKKLKVSDKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNDIIKSIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYSITFNFNANPYFEDSKLVKTYTFLEEGTTKVTATPIKWKEGKSIPNGVSHEKKGNKRASIDISFFSWFNDTEQKDEIDDIHDEQVAELIKDDLWPNPLTYFNNEEPDEDEVDEDEADDEGKDDGDSEDDDDEGEEDDDEGEEDDGK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1942 265 Pfam Nucleosome assembly protein (NAP) 73 222 IPR002164 GO:0005634|GO:0006334
Pvu9g1942 265 Pfam Nucleosome assembly protein (NAP) 29 73 IPR002164 GO:0005634|GO:0006334
Pvu9g1942 265 Coils Coil 25 59 - -
Pvu9g1942 265 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 2 251 IPR002164 GO:0005634|GO:0006334
Pvu9g1942 265 PANTHER NUCLEOSOME ASSEMBLY PROTEIN (NAP)-RELATED 2 251 - -
Pvu9g1942 265 Gene3D - 1 75 - -
Pvu9g1942 265 SUPERFAMILY NAP-like 7 221 IPR037231 -
Pvu9g1942 265 MobiDBLite consensus disorder prediction 212 265 - -
Pvu9g1942 265 MobiDBLite consensus disorder prediction 222 265 - -
Pvu9g1942 265 Gene3D Nucleosome assembly protein 76 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1942 Pvu-Chr9 27854965 27859003 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1942 K11290 - gmx:100808081 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1972 3 40288687 40292696 Pvu9g1942 9 27854965 27859003 ECH
Pvu9g1942 9 27854965 27859003 Pvu9g1942 9 27854965 27859003 ECH
Pvu9g1942 9 27854965 27859003 Pvu3g1972 3 40288687 40292696 PCT