Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1900 ATGAAGCGAAAGCTTGAAACGCTGTTTATGTTAACACGAAAACGATCGATTCAGTTTCTAATCGGTGCGCTTTTCTTCTACCTCGTACTCGTCACACTCGAAATCCCTTTCGTTTTCAAAACCGACTTCACCGCCGTCGCCACGCGCCCTCTCAAGCTCCTAAGCGAGGAAGACTCGCAACTAAAGGATTCTCCGGCGCGTCCTTTGAAAACGGTTTCCAACGCTCACTCGCCGAGTCAACTCGCTAGCCGCAGTGTCCTTTCGGCGTTGGTCCTAAACGAGGCGGCGTTTGAATCCAAGGGCAACGACGGGTCGTTCGAGCTCTACAAGCTTGTAAAGCACGCGCGCCAGGTGGGACGGAGACTCTGGAAGGACCTCGAATCTGGAAAGTCGCGGACCGTTGTCTCGAAGCCCGAGAACCGGTCCAGTTCATGTCCCGGTTCGGTTTCTCTGTCCGTTTCGGACACCTTGGGCGTCGTGCCGCTGCCGTGTGGGCTCACATTGGGCTCACACGTGACGGTCGTTGGGAAGCCGTTGGCGGCGCGGCCGGATTTCGAGCCGAAGATAGCGGTTGTGACGGAGGATGAACCGGTGATGGTGTCTCAGTTTGTGGTGGAGTTGCAGGGGCTGAAGACGGTGGACGGTGAAGAGCCTCCTAGGGTTTTTCACTTCAACCCGAGGTTGAAGGGGGATTGGAGTGGGAAGCCTGTGATTGAACTCAACACGTGTTATCGCATGCAGTGGGGTTCCGCTCTCAGGTGCGACGGTTGGAAATCCAAAGCCGATGAAGATACCGTGGATAGGATGGTGAAGTGCGAGAAGTGGATTAAGGATGATGAAGATCACTTTGAGGAATCTAAGTCGACGTGGTGGTTGAAAAGACTGATAGGGCGCACCAAGAAAGTAAACGTTGAGTGGCCATTCCCATTTTCTGAGGGGAAGCTATTTGTTCTTACTGTTAGTGCTGGGTTGGAGGGGTATCATGTTACTGTTGATGGGAGACATGTGACATCTTTTCCTTATCGCGCTGGTTTTACTCTTGAGGATGCCACCGGGCTTTCGCTGACTGGAGACATTGATGTTCACTCTGTATTTGCAGCGTCTTTGCCTTCATCGCATCCCAGTTTTTCCCCACAGCGGCATCTTGAATTTTCCACCAGGTGGCGTGCCCAGCCACTTTCTGACTCTGGCGTAGAATTGTTCATTGGTGTCCTCTCAGCTGGAAACCATTTTTCTGAGCGGATGGCTGTGAGAAAGTCATGGATGCAGCATAGGCTTGTCAAATCTGGAGCAGTGGTTGCTCGATTCTTTGTTGCACTGCATGCAAGACAGGAAATTAATGTAGAGTTGAAGAAGGAAGCAGAATTTTTTGGTGATATTGTTATAGTGCCTTACTTAGATAACTATGATCTTGTTGTGTTGAAAACGGTGGCCATATGTGATTATGGGGTTCATACGGTTTCTGCTAAGTATATCATGAAAGGCGATGATGATACTTTTGTTAGAGTGGATGCCGTTATCAGTGAAGCAAGGAAGATTCCAGACGATACCAGCTTTTATATCGGTAACATAAATTACTATCATAAACCCTTGCGATATGGGAAATGGGCAGTGACCTATGAAGAATGGCCAGAAGAGGATTACCCACCCTACGCTAATGGCCCGGGTTATATTTTGTCATCAGATATTGCACTATATATTGTATCTGAATTTGAAATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACAGCTCGAAACCTGTACACTACTCTCATAGCTTGAAGTTCTGCCAATTTGGTTGCATAGAAGACTATTACACCGCCCATTACCAATCGCCCAGGCAGATGATGTGTCTGTGGGATAAACTGCAAAGGCAGGCAAGGCCTCAGTGCTGTGACATGAGATGA 1941 0.4869 MKRKLETLFMLTRKRSIQFLIGALFFYLVLVTLEIPFVFKTDFTAVATRPLKLLSEEDSQLKDSPARPLKTVSNAHSPSQLASRSVLSALVLNEAAFESKGNDGSFELYKLVKHARQVGRRLWKDLESGKSRTVVSKPENRSSSCPGSVSLSVSDTLGVVPLPCGLTLGSHVTVVGKPLAARPDFEPKIAVVTEDEPVMVSQFVVELQGLKTVDGEEPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADEDTVDRMVKCEKWIKDDEDHFEESKSTWWLKRLIGRTKKVNVEWPFPFSEGKLFVLTVSAGLEGYHVTVDGRHVTSFPYRAGFTLEDATGLSLTGDIDVHSVFAASLPSSHPSFSPQRHLEFSTRWRAQPLSDSGVELFIGVLSAGNHFSERMAVRKSWMQHRLVKSGAVVARFFVALHARQEINVELKKEAEFFGDIVIVPYLDNYDLVVLKTVAICDYGVHTVSAKYIMKGDDDTFVRVDAVISEARKIPDDTSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIALYIVSEFEMHKLRLFKMEDVSMGMWVEQFNSSKPVHYSHSLKFCQFGCIEDYYTAHYQSPRQMMCLWDKLQRQARPQCCDMR* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1900 646 SMART galectin_3 159 367 IPR001079 GO:0030246
Pvu9g1900 646 Pfam Galactoside-binding lectin 160 365 IPR001079 GO:0030246
Pvu9g1900 646 Pfam Galactosyltransferase 413 593 IPR002659 GO:0006486|GO:0016020|GO:0016758
Pvu9g1900 646 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 6 646 - -
Pvu9g1900 646 SUPERFAMILY Concanavalin A-like lectins/glucanases 160 365 IPR013320 -
Pvu9g1900 646 MobiDBLite consensus disorder prediction 57 77 - -
Pvu9g1900 646 Gene3D - 154 275 - -
Pvu9g1900 646 Gene3D - 391 642 - -
Pvu9g1900 646 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 158 367 IPR001079 GO:0030246
Pvu9g1900 646 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 6 646 IPR002659 GO:0006486|GO:0016020|GO:0016758
Pvu9g1900 646 SMART Gal_bind_lectin_2 162 366 IPR001079 GO:0030246
Pvu9g1900 646 CDD GLECT 159 365 IPR001079 GO:0030246
Pvu9g1900 646 Gene3D - 282 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1900 Pvu-Chr9 27104524 27108022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1900 4 646 Glycosyltransferase AT1G74800 62.969 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1900 K20843 - gmx:100816777 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1900 9 27104524 27108022 Pvu9g1900 9 27104524 27108022 ECH
Pvu3g2013 3 40748874 40753083 Pvu9g1900 9 27104524 27108022 PCT