Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2013 ATGAAAAGAGGGAGAATAGGCAAGTTAGATACTTTTTTCACATTCACCAGACAACGATCCACTCAGATTCTCATCGTTCTTGCGCTCTTCTACGCTCTCTTCGTCTCCGTCGAGATCCCCTTCGTCTTCAGAACCGTTCAAGAACAACCGTCTCGCCTCCCGCCACTCGTTCGCCACCCAAACGGCGTCGTCTCCGGTTTGATCCTAAACGACGCCACATTCGATTCCTTCCTCTACCAATCCGCCTGCCGCGTCGGCAGGGAGCTTTGGGCCGAACTTAAATCAGGCAACGCGCAGGCCCCCGTTTCCAAGCCCGACAACAGATCCAGGCCCTGCCCCGAGTCCATATGGGTATCCGGGCCCGATTTTTTGGGCCGTGGGAGTTCGATGGTGATTCCCTGTGGGCTCACGTTAGGGTCCCATGTAACGGTGGTTGGGGAGCCGTTAAGAGCGCAACGGAAGGCGTGTCAGTTTGTGATGGAGTTGCAGGGGCTGAAGACGGTGGAGGGTGAAGAACCACCTAGGGTCTTACATCTGAATCCTAGGTTGAGAGGGGATTGGAGTGGGAAGCCTGTGATTGAACTCAACACGTGTTACCGCATGCAATGGGGTACTGCAATACGCTGTGATGGTTGGAAATCCAGAGCTGGTGAAGATACTGTTGATGGGTTGGTGAAATGTGACAAGTGGATTAGGGCTGATGATGATGACAGGCATGCAGTGGAGACCAAGGTACAGTGGTGGCTGAAGAGATTGATTGGTCGGACAAAACGAGTAACAGTTGATTGGCCATTTCCATTCTCTGTGAACAAGCTATTTGTTCTTACTGTCAGTGCTGGGTTGGAGGGCTACCATGTTAATGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCGCACTGGCTTTACTCTTGAGGATGCCACTGGTCTTACTTTGAGCGGGGACATTAGTGTCCATTCTGTATTTGCTGCTTCTTTGCCTTCGGTGCATCCCAACATTTCCCCGCAGCAGCAGCTTGAATTTTCAACCAGATGGCGTGCCCCAAATCTTCCTCCCTTTGGCGTGGAATTGTTCGTTGGGATACTTTCAGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGCTTTATCAAATCTTCGAAAGTGGTTGCTCGCTTCTTTGTAGCACTGCACCCGAAGAAGGAAATTAACGTGGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATGGATAACTATGACCTTGTTGTGCTGAAAACGGTGGCCATATGTGAGTACGGGGTTCGCACAGTTTCTGCGGAGTATATCATGAAGGGAGATGATGACACTTTTGTAAAAGTTGATGATGTTATGACTCAAGCCAGGAATGTTCCATATTCTACGAGCTTTTATATAGGGAACATCAATTACCGCCACACACCCTTGCGCCGTGGTAAATGGGCCGTAACATATGAGGAGTGGCCAGAAGAGGAATACCCCCCGTATGCTAACGGACCGGGTTATATTTTGTCTTCTGATATTGCAAGCTACATTTTATCTGAATTTGAGGTGCATAAATTAAGGTTGTTTAAAATGGAAGATGTGAGTATGGGAATGTGGGTACAACAATTTAACAGAACAAAACCAGTGTACTATTTGCATAGCTTGATGTTCTGCCAGTTTGGTTGTGTGGAAGGCTATATCACAGCCCATTACCAATCGCCTAGGCAGATGATGTGCCTGTGGGATAAATTGCAGATGCAGAGAATTCCTGAGTGCTGCAACATGAGATAA 1812 0.4807 MKRGRIGKLDTFFTFTRQRSTQILIVLALFYALFVSVEIPFVFRTVQEQPSRLPPLVRHPNGVVSGLILNDATFDSFLYQSACRVGRELWAELKSGNAQAPVSKPDNRSRPCPESIWVSGPDFLGRGSSMVIPCGLTLGSHVTVVGEPLRAQRKACQFVMELQGLKTVEGEEPPRVLHLNPRLRGDWSGKPVIELNTCYRMQWGTAIRCDGWKSRAGEDTVDGLVKCDKWIRADDDDRHAVETKVQWWLKRLIGRTKRVTVDWPFPFSVNKLFVLTVSAGLEGYHVNVDGRHVTSFPYRTGFTLEDATGLTLSGDISVHSVFAASLPSVHPNISPQQQLEFSTRWRAPNLPPFGVELFVGILSAGNHFAERMAVRKSWMQHSFIKSSKVVARFFVALHPKKEINVELKKEAEYFGDIVIVPYMDNYDLVVLKTVAICEYGVRTVSAEYIMKGDDDTFVKVDDVMTQARNVPYSTSFYIGNINYRHTPLRRGKWAVTYEEWPEEEYPPYANGPGYILSSDIASYILSEFEVHKLRLFKMEDVSMGMWVQQFNRTKPVYYLHSLMFCQFGCVEGYITAHYQSPRQMMCLWDKLQMQRIPECCNMR* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2013 603 CDD GLECT 132 322 IPR001079 GO:0030246
Pvu3g2013 603 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 68 603 IPR002659 GO:0006486|GO:0016020|GO:0016758
Pvu3g2013 603 SMART Gal_bind_lectin_2 132 323 IPR001079 GO:0030246
Pvu3g2013 603 Gene3D - 128 221 - -
Pvu3g2013 603 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 68 603 - -
Pvu3g2013 603 SUPERFAMILY Concanavalin A-like lectins/glucanases 130 322 IPR013320 -
Pvu3g2013 603 Gene3D - 354 599 - -
Pvu3g2013 603 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 128 324 IPR001079 GO:0030246
Pvu3g2013 603 Gene3D - 231 322 - -
Pvu3g2013 603 Pfam Galactoside-binding lectin 129 322 IPR001079 GO:0030246
Pvu3g2013 603 Pfam Galactosyltransferase 370 550 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2013 Pvu-Chr3 40748874 40753083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2013 5 603 Glycosyltransferase AT1G74800 60.241 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2013 K20843 - gmx:100800292 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2013 3 40748874 40753083 Pvu3g2013 3 40748874 40753083 ECH
Pvu3g2013 3 40748874 40753083 Pvu9g1900 9 27104524 27108022 PCT