Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1881 ATGGAATACCCTCCATCATATAGCGTCTCTTCCTCTTCAAACTCCTCCCACCATCAACAAGGCTCAACATCTCTCTCTTCACAACGCAGCCTTATCTCAGTTCCATCCCTCAACTCTTCCACCACCGCCACTACCACCTTCCACCACTGCCTCACAACGCTCAAGGGCCACACCTCCTACATCTCCTCCCTCACCCTCTCCGGCAAATTCCTTTACACAGGCTCCTCCGACAGAGAAATCAGGTCCTGGAATCGTACCCCTCTCATCTCTCACCCTCAAAGCACCGTTCTCGCCGGAAACGGCGCCGTTAAGTCCTTAATAATCCAATCCAACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTCTGGAAAATCAGCAGCAGCAACAAAAGTAACCAGGAACATGATGAGGACCATGAAAAATACACGCACGTGGCCACACTCCCCACCCTCGGAGACCGCGCCTCGAAGGTTCTGATCCCGAAGAACCATGTCCAAATCCGAAGGCACAAGAAGTGCACGTGGGTTCATCACGTGGACACTGTGTCCGCGCTCGCACTGTCGAAAGACGGGACCTTGCTGTACTCCGTTTCGTGGGACAGAAGCATAAAAATCTGGAGAACCAAGGACTTTGCATGTCTGGAGTCTGTCACCAACGCACACGACGACGCCATAAACGCCATCGCAGTTTCTTACGATGGACTTGTGATCACGGGATCAGCAGACAAGAGAATCAAGGTGTGGAGGAAGGAAGAAGGGGAAAAAAGACACAGGCTGGTGGAGACTTTGGAGAAGCACAACTCTGGGGTGAATGCGTTGGCTCTGAGCAATGACGAGAGCCATTTGTATTCGGGTGCATGCGATAGATCTGTTTTAGTTTGGGAGAAAAAGGGAGGGAGAATGGGGTTGGTGGGTGCGTTGAGGGGCCACACGAAATCCATTTTGTGTTTGGCTGTTGTTGCTGATTTGGTTTGTAGCGGCTCTGCTGATAAAACGATTAGAATTTGGCGACGCCTTCATGCACAATATTCTTGTTTAGCTGTTTTAGAAGGACACGGTGGTTCAATCAAGTGCTTAACTGCAGTGCTTGACCACTGTAACCCATCTTTTCTACTCTACAGTGCCGCTTTGGACTGCGACATTAAGGTTTGGCAGATTTCAGTTCCTTCTATCTGA 1182 0.5034 MEYPPSYSVSSSSNSSHHQQGSTSLSSQRSLISVPSLNSSTTATTTFHHCLTTLKGHTSYISSLTLSGKFLYTGSSDREIRSWNRTPLISHPQSTVLAGNGAVKSLIIQSNKLFSAHQDHKIRVWKISSSNKSNQEHDEDHEKYTHVATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRSIKIWRTKDFACLESVTNAHDDAINAIAVSYDGLVITGSADKRIKVWRKEEGEKRHRLVETLEKHNSGVNALALSNDESHLYSGACDRSVLVWEKKGGRMGLVGALRGHTKSILCLAVVADLVCSGSADKTIRIWRRLHAQYSCLAVLEGHGGSIKCLTAVLDHCNPSFLLYSAALDCDIKVWQISVPSI* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1881 393 SUPERFAMILY WD40 repeat-like 49 388 IPR036322 GO:0005515
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 208 - -
Pvu9g1881 393 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 8 391 - -
Pvu9g1881 393 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Pvu9g1881 393 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Pvu9g1881 393 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Pvu9g1881 393 CDD WD40 50 387 - -
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
Pvu9g1881 393 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Pvu9g1881 393 Pfam WD domain, G-beta repeat 216 250 IPR001680 GO:0005515
Pvu9g1881 393 Pfam WD domain, G-beta repeat 346 386 IPR001680 GO:0005515
Pvu9g1881 393 Pfam WD domain, G-beta repeat 178 208 IPR001680 GO:0005515
Pvu9g1881 393 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515
Pvu9g1881 393 Pfam WD domain, G-beta repeat 306 338 IPR001680 GO:0005515
Pvu9g1881 393 Gene3D - 9 162 IPR015943 GO:0005515
Pvu9g1881 393 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 391 IPR045182 -
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 338 IPR001680 GO:0005515
Pvu9g1881 393 SMART WD40_4 258 297 IPR001680 GO:0005515
Pvu9g1881 393 SMART WD40_4 47 84 IPR001680 GO:0005515
Pvu9g1881 393 SMART WD40_4 89 126 IPR001680 GO:0005515
Pvu9g1881 393 SMART WD40_4 170 209 IPR001680 GO:0005515
Pvu9g1881 393 SMART WD40_4 212 251 IPR001680 GO:0005515
Pvu9g1881 393 SMART WD40_4 344 387 IPR001680 GO:0005515
Pvu9g1881 393 SMART WD40_4 302 339 IPR001680 GO:0005515
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 84 IPR001680 GO:0005515
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 297 IPR001680 GO:0005515
Pvu9g1881 393 Gene3D - 166 391 IPR015943 GO:0005515
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 338 - -
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 250 - -
Pvu9g1881 393 MobiDBLite consensus disorder prediction 1 29 - -
Pvu9g1881 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1881 Pvu-Chr9 26818981 26820837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1881 196 390 Acyl Lipid Metabolism Gene Families AT3G18860 27.041 7.47e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1881 - - gmx:100777242 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2034 3 40961516 40962961 Pvu9g1881 9 26818981 26820837 ECH
Pvu9g1881 9 26818981 26820837 Pvu9g1881 9 26818981 26820837 ECH
Pvu3g2034 3 40961516 40962961 Pvu9g1881 9 26818981 26820837 PCT